| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NZ_CP009273 | 3610791 = | 44 (0.830) | 3 (0.070) | 3/142 | 3.9 | 4.6% | coding (417/765 nt) | nikD | nickel import ATP‑binding protein NikD |
| ? | NZ_CP009273 | 3611111 = | 88 (1.940) | coding (737/765 nt) | nikD | nickel import ATP‑binding protein NikD | |||||
| Rejected: Coverage evenness skew score above cutoff. | |||||||||||
| Rejected: Frequency below/above cutoff threshold. | |||||||||||
GTCAAGGTCGGTGGTCGGTTCATCGGCGATGATAAACGGTGATTCACACAGCACCGCCATCGCAATCATCATGCGCTGCAACATGCCGCCGCTCATCTCG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NZ_CP009273/3610890‑3610791‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ccgctcatctcgCCCTCTACGGTATGGAGCTGGCATCATGACTTTACTTAACATCTCCGGCCTTTCCCATCACTATGCGCACGGTGGATTTAACGGAAA > NZ_CP009273/3611111‑3611197 GTCAAGGTCGGTGGTCGGTTCATCGGCGATGATAAACGGTGATTCACACAGCACCGCCATCGCAATCATCATGCGCTGCAACATGCCGCC > 2:1013814/1‑90GTCAAGGTCGGTGGTCGGTTCATCGGCGATGATAAACGGTGATTCACACAGCACCGCCATCGCAATCATCATGCGCTGCAACATGCCGCC > 2:1167584/1‑90GTCAAGGTCGGTGGTCGGTTCATCGGCGATGATAAACGGTGATTCACACAGCACCGCCATCGCAATCATCATGCGCTGCAACATGCCGCC > 2:685365/1‑90 CAAGGTCGGTGGTCGGTTCATCGGCGATGATAAACGGTGATTCACACAGCACCGCCATCGCAATCATCATGCGCTGCAACATGCCGCCGC < 1:416788/90‑1 AGGTCGGTGGTCGGTTCATCGGCGATGATAAACGGTGATTCACACAGCACCGCCATCGCAATCATCATGCGCTGCAACATGCCGCCGCTC < 1:432805/90‑1 GGTCGGTGGTCGGTTCATCGGCGATGATAAACGGTGATTCACACAGCACCGCCATCGCAATCATCA‑GCGCTGCAACATGCCGCCGCTCAT > 2:1269358/1‑90 GGTGGTCGGTTCATCGGCGATGATAAACGGTGATTCACACAGCACCGCCATCGCAATCATCATGCGCTGCAACATGCCGCCGCTCATCTC > 1:1009306/1‑90 GGTGGTCGGTTCATCGGCGATGATAAACGGTGATTCACACAGCACCGCCATCGCAATCATCATGCGCTGCAACATGCCGCCGCTCATCTC > 1:1045579/1‑90 GATTCACACAGCACCGCCATCGCAATCATCATGCGCTGCAACATGCCGCCGCTCATCTCGCCCTCTACGGTATGGAGCTGGCATCATGAC > 1:974942/1‑90 GCACCGCCATCGCAATCATCATGCGCTGCAACATGCCGCCGCTCATCTCGCCCTCTACGGTATGGAGCTGGCATCATGACTTTACTTAAC > 2:77666/1‑90 GCAATCATCATGCGCTGCAACATGCCGCCGCTCATCTCGCCCTCTACGGTATGGAGCTGGCATCATGACTTTACTTAACATCTCCGGCCT < 2:974942/90‑1 CGCTCATCTCGCCCTCTACGGTATGGAGCTGGCATCATGACTTTACTTAACATCTCCGGCCTTTCCCATCACTATGCGCACGGTGGATTT > 1:1122775/1‑90 CATCTCGCCCTCTACGGTATGGAGCTGGCATCATGACTTTACTTAACATCTCCGGCCTTTCCCATCACTATGCGCACGGTGGATTTAACG > 1:175213/1‑90 ATCTCGCCCTCTACGGTATGGAGCTGGCATCATGACTTTACTTAACATCTCCGGCCTTTCCCATCACTATGCGCACGGTGGATTTAACGG > 2:815581/1‑90 TCGCCCTCTACGGTATGGAGCTGGCATCATGACTTTACTTAACATCTCCGGCCTTTCCCATCACTATGCGCACGGTGGATTTAACGGAAA < 1:49452/90‑1 TCGCCCTCTACGGTATGGAGCTGGCATCATGACTTTACTTAACATCTCCGGCCTTTCCCATCACTATGCGCACGGTGGATTTAACGGAAA < 2:1442473/90‑1 GTCAAGGTCGGTGGTCGGTTCATCGGCGATGATAAACGGTGATTCACACAGCACCGCCATCGCAATCATCATGCGCTGCAACATGCCGCCGCTCATCTCG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NZ_CP009273/3610890‑3610791‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ccgctcatctcgCCCTCTACGGTATGGAGCTGGCATCATGACTTTACTTAACATCTCCGGCCTTTCCCATCACTATGCGCACGGTGGATTTAACGGAAA > NZ_CP009273/3611111‑3611197 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 25 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |