| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NZ_CP009273 | 4501747 = | 41 (0.770) | 3 (0.060) | 3/150 | 4.0 | 6.7% | coding (485/957 nt) | fecD | Fe(3+) dicitrate ABC transporter permease subunit FecD |
| ? | NZ_CP009273 | 4501885 = | 46 (0.960) | coding (347/957 nt) | fecD | Fe(3+) dicitrate ABC transporter permease subunit FecD | |||||
| Rejected: Coverage evenness skew score above cutoff. | |||||||||||
| Rejected: Frequency below/above cutoff threshold. | |||||||||||
CATCAGCGGGATGGCAATCTTCACAAAGCTCCAGTCACGGCCCCATAAGCTGCCGGTCAGCCACAGCAGGGCGTTGTTCACATCCTGCGGGCGCGAGAGCATCAGATAATCCGTCAGGCTGGCCCAGCATGCAGAAAGCGCCACGCCGGTGAGCGCCAGCTTCATCGGCTGGTGG > NZ_CP009273/4501662‑4501836 | catcaGCGGGATGGCAATCTTCACAAAGCTCCAGTCACGGCCCCATAAGCTGCCGGTCAGCCACAGCAGGGCGTTGTTCACATCCTGCgg > 2:742455/1‑90 (MQ=255)catcaGCGGGATGGCAATCTTCACAAAGCTCCAGTCACGGCCCCATAAGCTGCCGGTCAGCCACAGCAGGGCGTTGTTCACATCCTGCgg > 2:721728/1‑90 (MQ=255) gggATGGCAATCTTCACAAAGCTCCAGTCACGGCCCCATAAGCTGCCGGTCAGCCACAGCAGGGCGTTGTTCACATCCTGCGGGCGCgag < 1:1128029/90‑1 (MQ=255) gggATGGCAATCTTCACAAAGCTCCAGTCACGGCCCCATAAGCTGCCGGTCAGCCACAGCAGGGCGTTGTTCACATCCTGCGGGCGCgag < 1:159757/90‑1 (MQ=255) gggATGGCAATCTTCACAAAGCTCCAGTCACGGCCCCATAAGCTGCCGGTCAGCCACAGCAGGGCGTTGTTCACATCCTGCGGGCGCgag < 2:1274000/90‑1 (MQ=255) gggATGGCAATCTTCACAAAGCTCCAGTCACGGCCCCATAAGCTGCCGGTCAGCCACAGCAGGGCGTTGTTCACATCCTGCGGGCGCgag < 2:931642/90‑1 (MQ=255) acaAAGCTCCAGTCACGGCCCCATAAGCTGCCGGTCAGCCACAGCAGGGCGTTGTTCACATCCTGCGGGCGCGAGAGCATCAGATAATcc > 1:97639/1‑90 (MQ=255) caAAGCTCCAGTCACGGCCCCATAAGCTGCCGGTCAGCCACAGCAGGGCGTTGTTCACATCCTGCGGGCGCGAGAGCATCAGATAATCCg > 1:176760/1‑90 (MQ=255) gCTCCAGTCACGGCCCCATAAGCTGCCGGTCAGCCACAGCAGGGCGTTGTTCACATCCTGCGGGCGCGAGAGCATCAGATAATCCGTCAg > 2:1351481/1‑90 (MQ=255) cTCCAGTCACGGCCCCATAAGCTGCCGGTCAGCCACAGCAGGGCGTTGTTCACATCCTGCGGGCGCGAGAGCATCAGATAATCCGTCAgg > 2:165151/1‑90 (MQ=255) tCCAGTCACGGCCCCATAAGCTGCCGGTCAGCCACAGCAGGGCGTTGTTCACATCCTGCGGGCGCGAGAGCATCAGATAATCCGTCAGGc < 2:944534/90‑1 (MQ=255) ccAGTCACGGCCCCATAAGCTGCCGGTCAGCCACAGCAGGGCGTTGTTCACATCCTGCGGGCGCGAGAGCa < 2:507090/71‑1 (MQ=255) ccAGTCACGGCCCCATAAGCTGCCGGTCAGCCACAGCAGGGCGTTGTTCACATCCTGCGGGCGCGAGAGCa > 1:507090/1‑71 (MQ=255) ccAGTCACGGCCCCATAAGCTGCCGGTCAGCCACAGCAGGGCGTTGTTCACATCCTGCGGGCGCGAGAGCATCAGATAATCCGTCAGGCt > 1:475461/1‑90 (MQ=255) ccAGTCACGGCCCCATAAGCTGCCGGTCAGCCACAGCAGGGCGTTGTTCACATCCTGCGGGCGCGAGAGCATCAGATAATCCGTCAGGCt > 2:1583776/1‑90 (MQ=255) ccccATAAGCTGCCGGTCAGCCACAGCAGGGCGTTGTTCACATCCTGCGGGCGCGAGAGCATCAGATAATCCGTCAGGCTGGCCCAGCAt > 1:230132/1‑90 (MQ=255) cATAAGCTGCCGGTCAGCCACAGCAGGGCGTTGTTCACATCCTGCGGGCGCgag > 1:850306/1‑54 (MQ=255) cATAAGCTGCCGGTCAGCCACAGCAGGGCGTTGTTCACATCCTGCGGGCGCgag < 2:850306/54‑1 (MQ=255) cATAAGCTGCCGGTCAGCCACAGCAGGGCGTTGTTCACATCCTGCGGGCGCGAGAGCATCAGATAATCCGTCAGGCTGGCCCAGCATGCa > 2:162064/1‑90 (MQ=255) cATAAGCTGCCGGTCAGCCACAGCAGGGCGTTGTTCACATCCTGCGGGCGCGAGAGCATCAGATAATCCGTCAGGCTGGCCCAGCATGCa > 2:1118227/1‑90 (MQ=255) aGCTGCCGGTCAGCCACAGCAGGGCGTTGTTCACATCCTGCGGGCGCGAGAGCATCAGATAATCCGTCAGGCTGGCCCAGCATGCAGaaa > 1:490922/1‑90 (MQ=255) aGCTGCCGGTCAGCCACAGCAGGGCGTTGTTCACATCCTGCGGGCGCGAGAGCATCAGATAATCCGTCAGGCTGGCCCAGCATGCAGaaa > 1:394341/1‑90 (MQ=255) aGCTGCCGGTCAGCCACAGCAGGGCGTTGTTCACATCCTGCGGGCGCGAGAGCATCAGATAATCCGTCAGGCTGGCCCAGCATGCAGaaa > 1:1300008/1‑90 (MQ=255) aGCTGCCGGTCAGCCACAGCAGGGCGTTGTTCACATCCTGCGGGCGCGAGAGCATCAGATAATCCGTCAGGCTGGCCCAGCATGCAGaaa < 2:866572/90‑1 (MQ=255) cTGCCGGTCAGCCACAGCAGGGCGTTGTTCACATCCTGCGGGCGCGAGAGCATCAGATAATCCGTCAGGCTGGCCCAGCATGCAGAAAgc < 2:230132/90‑1 (MQ=255) gCCGGTCAGCCACAGCAGGGCGTTGTTCACATCCTGCGGGCGCGagag > 1:4491/1‑48 (MQ=255) gCCGGTCAGCCACAGCAGGGCGTTGTTCACATCCTGCGGGCGCGagag < 2:4491/48‑1 (MQ=255) gCCGGTCAGCCACAGCAGGGCGTTGTTCACATCCTGCGGGCGCGAGAGCATCAGATAATCCGTCAGGCTGGCCCAGCATGCAGAAAgcgc > 1:54136/1‑90 (MQ=255) gCCGGTCAGCCACAGCAGGGCGTTGTTCACATCCTGCGGGCGCGAGAGCATCAGATAATCCGTCAGGCTGGCCCAGCATGCAGAAAgcgc > 1:771755/1‑90 (MQ=255) gCCGGTCAGCCACAGCAGGGCGTTGTTCACATCCTGCGGGCGCGAGAGCATCAGATAATCCGTCAGGCTGGCCCAGCATGCAGAAAgcgc > 1:379273/1‑90 (MQ=255) ggTCAGCCACAGCAGGGCGTTGTTCACATCCTGCGGGCGCGAGAGCATCAGATAATCCGTCAGGCTGGCCCAGCATGCAGAAAGCGCCAc > 2:1580200/1‑90 (MQ=255) aGCCACAGCAGGGCGTTGTTCACATCCTGCGGGCGCGAGAGCATCAGATAATCCGTCAGGCTGGCCCAGCATGCAGAAAGCGCCACGCCg > 2:227280/1‑90 (MQ=255) ggCGTTGTTCACATCCTGCGGGCGCGAGAGCATCAGATAATCCGTCAGGCTGGCCCAGCATGCAGAAAGCGCCACGCCGGTGAGCGCCAg > 2:260398/1‑90 (MQ=255) ggCGTTGTTCACATCCTGCGGGCGCGAGAGCATCAGATAATCCGTCAGGCTGGCCCAGCATGCAGAAAGCGCCACGCCGGTGAGCGCCAg > 2:1046702/1‑90 (MQ=255) ggCGTTGTTCACATCCTGCGGGCGCGAGAGCATCAGATAATCCGTCAGGCTGGCCCAGCATGCAGAAAGCGCCACGCCGGTGAGCGCCAg < 2:177708/90‑1 (MQ=255) ggCGTTGTTCACATCCTGCGGGCGCGAGAGCATCAGATAATCCGTCAGGCTGGCCCAGCATGCAGAAAGCGCCACGCCGGTGAGCGCCAg > 1:368408/1‑90 (MQ=255) gttgttCACATCCTGCGGGCGCGAGAGCATCAGATAATCCGTCAGGCTGGCCCAGCATGCAGAAAGCGCCACGCCGGTGAGCGCCAGCtt < 1:1046702/90‑1 (MQ=255) ttgttCACATCCTGCGGGCGCGAGAGCATCAGATAATCCGTCAGGCTGGCCCAGCATGCAGAAAGCGCCACGCCGGTGAGCGCCAGCTTc > 2:1128398/1‑90 (MQ=255) acaTCCTGCGGGCGCGAGAGCATCAGATAATCCGTCAGGCTGGCCCAGCATGCAGAAAGCGCCACGCCGGTGAGCGCCAGCTTCATCGGc < 2:1466943/90‑1 (MQ=255) caTCCTGCGGGCGCGAGAGCATCAGATAATCCGTCAGGCTGGCCCAGCATGCAGAAAGCGCCACGCCGGTGAGCGCCAGCTTCATCGGCt > 2:1070311/1‑90 (MQ=255) cTGCGGGCGCGAGAGCATCAGATAATCCGTCAGGCTGGCCCAGCATGCAGAAAGCGCCACGCCGGTGAGCGCCAGCTTCATCGGCtggtg < 1:162064/90‑1 (MQ=255) tGCGGGCGCGAGAGCATCAGATAATCCGTCAGGCTGGCCCAGCATGCAGAAAGCGCCACGCCGGTGAGCGCCAGCTTCATCGGCtggtgg > 2:945158/1‑90 (MQ=255) tGCGGGCGCGAGAGCATCAGATAATCCGTCAGGCTGGCCCAGCATGCAGAAAGCGCCACGCCGGTGAGCGCCAGCTTCATCGGCtggggg > 1:420441/1‑90 (MQ=255) tGCGGGCGCGAGAGCATCAGATAATCCGTCAGGCTGGCCCAGCATGCAGAAAGCGCCACGCCGGTGAGCGCCAGCTTCATCGGCtggggg > 1:1157436/1‑90 (MQ=255) tGCGGGCGCGAGAGCATCAGATAATCCGTCAGGCTGGCCCAGCATGCAGAAAGCGCCACGCCGGTGAGCGCCAGCTTCATCGGCtggggg > 1:1121580/1‑90 (MQ=255) | CATCAGCGGGATGGCAATCTTCACAAAGCTCCAGTCACGGCCCCATAAGCTGCCGGTCAGCCACAGCAGGGCGTTGTTCACATCCTGCGGGCGCGAGAGCATCAGATAATCCGTCAGGCTGGCCCAGCATGCAGAAAGCGCCACGCCGGTGAGCGCCAGCTTCATCGGCTGGTGG > NZ_CP009273/4501662‑4501836 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 30 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |