| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NZ_CP009273 | 4501747 = | 41 (0.770) | 3 (0.060) | 3/150 | 4.0 | 6.7% | coding (485/957 nt) | fecD | Fe(3+) dicitrate ABC transporter permease subunit FecD |
| ? | NZ_CP009273 | 4501885 = | 46 (0.960) | coding (347/957 nt) | fecD | Fe(3+) dicitrate ABC transporter permease subunit FecD | |||||
| Rejected: Coverage evenness skew score above cutoff. | |||||||||||
| Rejected: Frequency below/above cutoff threshold. | |||||||||||
CCACGCCGGTGAGCGCCAGCTTCATCGGCTGGTGGGTCTTTGCCAGCATCTTCAGCAATATCAACCCCGCCATGCCGCCCGCAAAGGCCAGCAGCGGCAGCACCATCACGGGCAGTGACGGCATAAGAAGTAGAGCCCCCACAGAGGCCAGGCTGGCGGCATGGTTAACACCG > NZ_CP009273/4501802‑4501974 | ccACGCCGGTGAGCGCCAGCTTCATCGGCTGGGGGGGCTTTGCCAGCATCTTCAGCAATATCAACCCCGCCATGCCGCCCGCAAAGGCca > 1:1050887/1‑90 (MQ=255) cACGCCGGTGAGCGCCAGCTTCATCGGCTGGTGGGTCTTTGCCAGCATCTTCAGCAATATCAACCCCGCCATGCCGCCCGCAAAGGCcag > 2:1567647/1‑90 (MQ=255) ccGCCGGTGAGCGCCACCTTCATCGGCGGGTGGGTTTTTGCCAGCATCTTAAGCAATACCAACCCCGCCATGCCGCCCGCAAAGGCcagc < 2:1255427/89‑1 (MQ=255) gTGAGCGCCAGCTTCACCGGCTGGGGGGTCTTTGCCAGCATCTTCAGCAATACCACCCCCGCCATGCCGCCCGCAAAGGCCAGCAGCGgc < 1:1477843/90‑1 (MQ=255) gAGCGCCAGCTTCATCGGCTGGTGGGTCTTTACCAGCATCTTCAGCAATATCAACCCCGCCATGCCGCCCGCAAAGGCCAGCAGCGgcag > 2:915039/1‑90 (MQ=255) ccAGCTTCATCGGCTGGTGGGTCTTTGCCAGCATCTTCAGCAATATCAACCCCGCCATGCCGCCCGCAAAGGCCAGCAGCGGCAGCACCa > 1:858296/1‑90 (MQ=255) gggTTTTTGCCAGCATCTTCAGCAATATCACCCCCGCCATGCCGCCCGCAAAGGCCAGCAGCGGCAGCACCATCACGGGCAGTGACGGCa < 1:742455/90‑1 (MQ=255) gggTCTTTGCCAGCATCTTCAGCAATCCCAACCCCGCCATGCCGCCCGCAAAGGCCAGCAGCGGCAGCACCATCACGGGCAGTGACGGCa < 1:53595/90‑1 (MQ=255) gggTCTTTGCCAGCATCTTCAGCAATATCAACCCCGCCATGCCGCCCGCAAAGGCCAGCAGCGGCAGCACCATCACGGGCAGTGACGGCa > 1:1411316/1‑90 (MQ=255) gtatttGCCAGCACCTTCAGCAATATAACCCCCGCCATGCCGCCCGCAAAGGCCAGCAGCGGCAGCACCATCACGGGCAGTGACGGCGTa < 1:665723/87‑1 (MQ=255) gTCTTTGCCGCTATCTTCCGCAATATCACCCCCGCCATGCCGCCCGCAAAGGCCAGCAGCGGCAGCACCATCACGGGCAGTGACGGCATa < 1:39491/90‑1 (MQ=255) gTCTTTGCCAGCATCTTCAGCAATATCAACCCCGCCATGCCGCCCGCAAAGGCCAGCAGCGGCAGCACCATCACGGGCAGTGACGGCATa > 2:818554/1‑90 (MQ=255) gTCTTTGCCAGCATCTTCAGCAATACCACCCCCGCCATGCCGCCCGCAAAGGCCAGCAGCGGCAGCACCATCACGGGCAGTGACGGCATa < 1:1383461/90‑1 (MQ=255) cTTTGCCAGCATCTTCAGCAATATCAACCCCGCCATGCCGCCCGCAAAGGCCAGCAGCGGCAGCACCATCACGGGCAGTGACGGCATaag > 2:79414/1‑90 (MQ=255) tttGCCAGCATCTTCAGCAATATCACCCCCGCCATGCCGCCCGCAAAGGCCAGCAGCGGCAGCACCATCACGGGCAGTGACGGCATaaga < 1:915039/90‑1 (MQ=255) ttGCCAGCATCTTCAGCAATATCAACCCCGCCATGCCGCCCGCAAAGGCCAGCAGCGGCAGCACCATCACGGGCAGTGACGGCATa > 1:844050/1‑86 (MQ=255) ttGCCAGCATCTTCAGCAATATCAACCCCGCCATGCCGCCCGCAAAGGCCAGCAGCGGCAGCACCATCACGGGCAGTGACGGCATa < 2:844050/86‑1 (MQ=255) cAGCATCTTCAGCAATATCACCCCCGCCATGCCGCCCGCAAAGGCCAGCAGCGGCAGCACCATCACGGGCAGTGACGGCATAAGAAGTag < 1:1560838/90‑1 (MQ=255) aGCATCTTCAGCAATATCAACCCCGCCATGCCGCCCGCAAAGGCCAGCAGCGGCAGCACCATCACGGGCAGTGACGGCATAAGAAGTaga < 2:1050887/90‑1 (MQ=255) gCATCTTCAGCAATATCACCCCCGCCATGCCGCCCGCAAAGGCCAGCAGCGGCAGCACCATCACGGGCAGTGAc < 2:6134/74‑1 (MQ=255) gCATCTTCAGCAATATCAACCCCGCCATGCCGCCCGCAAAGGCCAGCAGCGGCAGCACCATCACGGGCAGTGAc > 1:6134/1‑74 (MQ=255) gCATCTTCAGCAATATCAACCCCGCCATGCCGCCCGCAAAGGCCAGCAGCGGCAGCACCATCACGGGCAGTGACGGCATAAGAAGTagag > 2:1190700/1‑90 (MQ=255) gCATCTTCAGCAATATCAACCCCGCCATGCCGCCCGCAAAGGCCAGCAGCGGCAGCACCATCACGGGCAGTGACGGCATAAGAAGTagag > 2:686749/1‑90 (MQ=255) gCATCTTCAGCAATATCAACCCCGCCATGCCGCCCGCAAAGGCCAGCAGCGGCAGCACCATCACGGGCAGTGACGGCATAAGAAGTagag > 1:493006/1‑90 (MQ=255) cTTCAGCAATATCACCCCCGCCATGCCGCCCGCAAAGGCCAGCAGCGGCAGCACCATCACGGGCAGTGACGGCATAAGAAGTAGAGcccc < 2:483576/90‑1 (MQ=255) atatCACCCCCGCCATGCCGCCCGCAAAGGCCAGCAGCGGCAGCACCATCACGGGCAGTGACGGCATAAGAAGTAGAGCCCCCACag < 1:353731/87‑1 (MQ=255) atatCAACCCCGCCATGCCGCCCGCAAAGGCCAGCAGCGGCAGCACCATCACGGGCAGTGACGGCATAAGAAGTAGAGCCCCCACag > 2:353731/1‑87 (MQ=255) atCAACCCCGCCATGCCGCCCGCAAAGGCCAGCAGCGGCAGCACCATCACGGGCAGTGACGGCATAAGAAGTAGAGCCCCCACAGAGGcc > 2:1194805/1‑90 (MQ=255) aaCCCCGCCATGCCGCCCGCAAAGGCCAGCAGCGGCAGCACCATCACGGGCAGTGACGGCATAAGAAGTAGAGCCCCCACag < 2:526664/82‑1 (MQ=255) aaCCCCGCCATGCCGCCCGCAAAGGCCAGCAGCGGCAGCACCATCACGGGCAGTGACGGCATAAGAAGTAGAGCCCCCACag > 1:526664/1‑82 (MQ=255) ccccGCCATGCCGCCCGCAAAGGCCAGCAGCGGCAGCACCATCACGGGCAGTGACGGCATAAGAAGTAGAGCCCCcaca < 1:1255377/79‑1 (MQ=255) ccccGCCATGCCGCCCGCAAAGGCCAGCAGCGGCAGCACCATCACGGGCAGTGACGGCATAAGAAGTAGAGCCCCcaca > 2:1255377/1‑79 (MQ=255) ccccGCCATGCCGCCCGCAAAGGCCAGCAGCGGCAGCACCATCACGGGCAGTGACGGCATAAGAAGTAGAGCCCCCACAGAGGCCAGGCt > 1:486301/1‑90 (MQ=255) cGCCATGCCGCCCGCAAAGGCCAGCAGCGGCAGCACCATCACGGGCAGTGACGGCATAAGAAGTagag > 2:936750/1‑68 (MQ=255) cGCCATGCCGCCCGCAAAGGCCAGCAGCGGCAGCACCATCACGGGCAGTGACGGCATAAGAAGTagag < 1:936750/68‑1 (MQ=255) gCCATGCCGCCCGCAAAGGCCAGCAGCGGCAGCAc > 1:925892/1‑35 (MQ=255) gCCATGCCGCCCGCAAAGGCCAGCAGCGGCAGCAc < 2:925892/35‑1 (MQ=255) gCCATGCCGCCCGCAAAGGCCAGCAGCGGCAGCACCa < 1:229254/37‑1 (MQ=255) gCCATGCCGCCCGCAAAGGCCAGCAGCGGCAGCACCa > 2:229254/1‑37 (MQ=255) ccATGCCGCCCGCAAAGGCCAGCAGCGGCAGCACCATCACGGGCAGTGACGGCATAAGAAGTAGAGCCCCCACAGAGGCCAGGCTggcgg > 2:1158866/1‑90 (MQ=255) aTGGCGCCCGCAAAGGCCAGCAGCGGCAGCACCATCACGGGCAGTGACGGCATAAGAAGTAGAGCCCCCACAGAGGCCAGGCTGGCGGCa < 1:632316/90‑1 (MQ=255) aTGCCGCCCGCAAAGGCCAGCAGCGGCAGCACCATCACGGGCAGTGACGGCATAAGAAGTAGAGCCCCCACAGAGGCCAGGCTGGCGGCa < 1:1266619/90‑1 (MQ=255) aTGCCGCCCGCAAAGGCCAGCAGCGGCAGCACCATCACGGGCAGTGACGGCATAAGAAGTAGAGCCCCCACAGAGGCCAGGCTGGCGGCa < 1:1580200/90‑1 (MQ=255) aTGCCGCCCGCAAAGGCCAGCAGCGGCAGCACCATCACGGGCAGTGACGGCATAAGAAGTAGAGCCCCCACAGAGGCCAGGCTGGCGGCa < 2:214854/90‑1 (MQ=255) aTGCCGCCCGCAAAGGCCAGCAGCGGCAGCACCATCACGGGCAGTGACGGCATAAGAAGTAGAGCCCCCACAGAGGCCAGGCTGGCGGCa < 2:1545680/90‑1 (MQ=255) aTGCCGCCCGCAAAGGCCAGCAGCGGCAGCACCATCACGGGCAGTGACGGCATAAGAAGTAGAGCCCCCACAGAGGCCAGGCTGGCGGCa < 1:1246486/90‑1 (MQ=255) tGCCGCCCGCAAAGGCCAGCAGCGGCAGCACCATCACGGGCAGTGACGGCATAAGAAGTAGAGCCCCCACAGAGGCCAGGCTGGCGGCAt < 1:829719/90‑1 (MQ=255) gcccgcAAAGGCCAGCAGCGGCAGCACCATCACGGGCAGTGACGGCATAAGAAGTAGAGCCCCCACAGAGGCCAGGCTGGCGGCATGGtt < 2:808909/90‑1 (MQ=255) cccgcAAAGGCCAGCAGCGGCAGCACCATCACGGGCAGTGACGGCATAAGAAGTaga < 1:714077/57‑1 (MQ=255) cccgcAAAGGCCAGCAGCGGCAGCACCATCACGGGCAGTGACGGCATAAGAAGTaga > 2:714077/1‑57 (MQ=255) cccgcAAAGGCCAGCAGCGGCAGCACCATCACGGGCAGTGACGGCATAAGAAGTAGAGCCCCCACAGAGGCCAGGCTGGCGGCATGGTTa < 1:1118227/90‑1 (MQ=255) ccgcAAAGGCCAGCAGCGGCAGCACCATCACGGGCAGTGACGGCATAAGAAGTAGAGCCCCCACAGAGGCCAGGCTGGCGGCATGGTTaa < 1:1032184/90‑1 (MQ=255) cAAAGGCCAGCAGCGGCAGCCCCATCACGGGCAGTGACGGCATAAGAAGTAGAGCCCCCACAGAGGCCAGGCTGGCGGCATGGTTAacac < 1:916557/90‑1 (MQ=255) cAAAGGCCAGCAGCGGCAGCACCATCACGGGCAGTGACGGCATAAGAAGTAGAGCCCCCACAGAGGCCAGGCTGGCGGCATGGTTAacac < 1:818554/90‑1 (MQ=255) aaGGCCAGCAGCGGCAGCCCCATCCCGGGCAGTGACGGCATAAGAAGTAGAGCCCCCACAGAGGCCAGGCTGGCGGCATGGTTAACACCg < 1:1085386/90‑1 (MQ=255) | CCACGCCGGTGAGCGCCAGCTTCATCGGCTGGTGGGTCTTTGCCAGCATCTTCAGCAATATCAACCCCGCCATGCCGCCCGCAAAGGCCAGCAGCGGCAGCACCATCACGGGCAGTGACGGCATAAGAAGTAGAGCCCCCACAGAGGCCAGGCTGGCGGCATGGTTAACACCG > NZ_CP009273/4501802‑4501974 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 7 ≤ ATCG/ATCG < 20 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |