New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NZ_CP009273	2416060 =	37 (0.790)	3 (0.070)	3/146	3.1	7.9%	coding (874/894 nt)	yfcH	TIGR01777 family oxidoreductase
	?	NZ_CP009273	2416107 =	38 (0.940)					intergenic (+27/+21)	yfcH/rpnB	TIGR01777 family oxidoreductase/recombination‑promoting nuclease RpnB
Rejected: Coverage evenness skew score above cutoff.
Rejected: Frequency below/above cutoff threshold.

AGACGATCTTATCGCGCAAAGCCACTAATCCTGTAACACCGGGAGTTAACTGGCGGATGTTTGCTGTAAACCACATCAGCGAACGACATCCGCCAG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NZ_CP009273/2416155‑2416060 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑acatccgccagTTAACTCCCGGTGTTACAGGATTAGTGGCTTTGCGCGATAAGATCGTCTGGTGAAAGTCGGGTCACCATCATAACTAACTCTC  >  NZ_CP009273/2416107‑2416189                                                                                                                                                                                     AGACGATCTTATCGCGCAAAGCCACTAATCCTGTAACACCGGGAGTTAACTGGCGGATGTTTGCTGTAAACCACATCAGCGAACGACATC                                                                                           <  1:208633/90‑1  GACGATCTTATCGCGCAAAGCCACTAATCCTGTAACACCGGGAGTTAACTGGCGGATGTTTGCTGTAAACCACATCAGCGAACGACATCC                                                                                          >  2:247484/1‑90     GATCTTATCGCGCAAAGCCACTAATCCTGTAACACCGGGAGTTAACTGGCGGATGTTTGCTGTAAACCACATCAGCGAACGACATCCGCC                                                                                       <  1:727076/90‑1      ATCTTATCGCGCAAAGCCACTAATCCTGTAACACCGGGAGTTAACTGGCGGATGTTTGCTGTAAACCACATCAGCGAACGACATCCGCCA                                                                                      <  2:1149128/90‑1       TCTTATCGCGCAAAGCCACTAATCCTGTAACACCGGGAGTTAACTGGCGGATGTTTGCTGTAAACCACATCAGCGAACGACATCCGCCAG                                                                                     >  2:14815/1‑90                      CCACTAATCCTGTAACACCGGGAGTTAACTGGCGGATGTTTGCTGTAAACCACATCAGCGAACGACATCCGCCAGTTAACTCCCGGTGTT                                                                      <  1:471789/90‑1                                         GGGAGTTAACTGGCGGATGTTTGCTGTAAACCACATCAGCGAACGACATCCGCCAGTTAACTCCCGGTGTTACAGGATTAGTGGCTTTGC                                                   <  2:529404/90‑1                                             GTTAACTGGCGGATGTTTGCTGTAAACCACATCAGCGAACGACATCCGCCAGTTAACTCCCAGTGTTACAGGATTAGTGGCTTTGCGCGA                                               <  1:1178022/90‑1                                                                                       CATCCGCCAGTTAACTCCCGGTGTTACAGGATTAGTGGCTTTGCGCGATAAGATCGTCTGGTGAAAGTCGGGTCACCATCATAACTAACT     >  1:118598/1‑90                                                                                          CCGCCAGTTAACTCCCGGTGTTACAGGATTAGTGGCTTTGCGCGATAAGATCGTCTGGTGAAAGTCGGGTCACCATCATAACTAACTCTC  <  2:1109329/90‑1                                                                                          CCGCCAGTTAACTCCCGGTGTTACAGGATTAGTGGCTTTGCGCGATAAGATCGTCTGGTGAAAGTCGGGTCACCATCATAACTAACTCTC  <  2:1098741/90‑1                                                                                          CCGCCAGTTAACTCCCGGTGTTACAGGATTAGTGGCTTTGCGCGATAAGATCGTCTGGTGAAAGTCGGGTCACCATCATAACTAACTCTC  <  1:969627/90‑1                                                                                          CCGCCAGTTAACTCCCGGTGTTACAGGATTAGTGGCTTTGCGCGATAAGATCGTCTGGTGAAAGTCGGGTCACCATCATAACTAACTCTC  <  2:18366/90‑1                                                                                          CCGCCAGTTAACTCCCGGTGTTACAGGATTAGTGGCTTTGCGCGATAAGATCGTCTGGTGAAAGTCGGGTCACCATCATAACTAACTCTC  >  1:877570/1‑90                                                                                          CCGCCAGTTAACTCCCGGTGTTACAGGATTAGTGGCTTTGCGCGATAAGATCGTCTGGTGAAAGTCGGGTCACCATCATAACTAACTCTC  <  2:264485/90‑1                                                                                          CCGCCAGTTAACTCCCGGTGTTACAGGATTAGTGGCTTTGCGCGATAAGATCGTCTGGTGAAAGTCGGGTCACCATCATAACTAACTCTC  <  2:273516/90‑1                                                                                          CCGCCAGTTAACTCCCGGTGTTACAGGATTAGTGGCTTTGCGCGATAAGATCGTCTGGTGAAAGTCGGGTCACCATCATAACTAACTCTC  <  2:417864/90‑1                                                                                          CCGCCAGTTAACTCCCGGTGTTACAGGATTAGTGGCTTTGCGCGATAAGATCGTCTGGTGAAAGTCGGGTCACCATCATAACTAACTCTC  <  2:471789/90‑1                                                                                          CCGCCAGTTAACTCCCGGTGTTACAGGATTAGTGGCTTTGCGCGATAAGATCGTCTGGTGAAAGTCGGGTCACCATCATAACTAACTCTC  >  1:472423/1‑90                                                                                          CCGCCAGTTAACTCCCGGTGTTACAGGATTAGTGGCTTTGCGCGATAAGATCGTCTGGTGAAAGTCGGGTCACCATCATAACTAACTCTC  <  2:727076/90‑1                                                                                          CCGCCAGTTAACTCCCGGTGTTACAGGATTAGTGGCTTTGCGCGATAAGATCGTCTGGTGAAAGTCGGGTCACCATCATAACTAACTCTC  <  2:877570/90‑1                                                                                                                                                                                     AGACGATCTTATCGCGCAAAGCCACTAATCCTGTAACACCGGGAGTTAACTGGCGGATGTTTGCTGTAAACCACATCAGCGAACGACATCCGCCAG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NZ_CP009273/2416155‑2416060 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑acatccgccagTTAACTCCCGGTGTTACAGGATTAGTGGCTTTGCGCGATAAGATCGTCTGGTGAAAGTCGGGTCACCATCATAACTAACTCTC  >  NZ_CP009273/2416107‑2416189

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 26 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.