mutation predictions | marginal predictions | summary statistics | genome diff | command line log
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breseq version 0.35.4 revision f352f80f4bc9
mutation predictions | marginal predictions | summary statistics | genome diff | command line log |
| Predicted mutations | |||||
|---|---|---|---|---|---|
| evidence | position | mutation | annotation | gene | description |
| RA | 49,765 | C→T | intergenic (+134/‑58) | kefC → / → folA | glutathione‑regulated potassium‑efflux system protein KefC/type 3 dihydrofolate reductase |
| RA | 49,884 | C→T | P21L (CCG→CTG) | folA → | type 3 dihydrofolate reductase |
| RA | 214,743 | A→C | Y174D (TAC→GAC) | proS ← | proline‑‑tRNA ligase |
| MC JC | 2,399,465 | Δ7 bp | coding (650‑656/939 nt) | lrhA ← | transcriptional regulator LrhA |
| RA | 3,754,231 | G→T | R127S (CGC→AGC) | selA ← | L‑seryl‑tRNA(Sec) selenium transferase |
| RA | 4,267,454 | C→T | R20C (CGC→TGC) | soxR → | redox‑sensitive transcriptional activator SoxR |
| Unassigned missing coverage evidence | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|
| seq id | start | end | size | ←reads | reads→ | gene | description | |||
| * | * | ÷ | NZ_CP009273 | 356981 | 357567 | 587 | 7 [0] | [0] 4 | lacA | galactoside O‑acetyltransferase |
| * | * | ÷ | NZ_CP009273 | 518507 | 518536 | 30 | 2 [0] | [1] 2 | ybbP/rhsD | ABC transporter permease/rhs element protein RhsD |
| * | * | ÷ | NZ_CP009273 | 524131 | 524190 | 60 | 3 [1] | [1] 2 | BW25113_RS24960 | hypothetical protein |
| * | * | ÷ | NZ_CP009273 | 578977 | 579071 | 95 | 3 [1] | [1] 3 | BW25113_RS26085/appY | tail fiber assembly protein/DNA‑binding transcriptional activator AppY |
| * | * | ÷ | NZ_CP009273 | 982708 | 982728 | 21 | 2 [1] | [0] 2 | ompF/asnS | porin OmpF/asparagine‑‑tRNA ligase |
| * | * | ÷ | NZ_CP009273 | 993132 | 993177 | 46 | 2 [1] | [1] 3 | ssuE/elfA | NADPH‑dependent FMN reductase/fimbrial protein |
| * | * | ÷ | NZ_CP009273 | 1205059 | 1205074 | 16 | 9 [0] | [0] 21 | BW25113_RS06005 | phage tail protein |
| * | * | ÷ | NZ_CP009273 | 1214925 | 1214928 | 4 | 4 [0] | [0] 3 | BW25113_RS06070/BW25113_RS25990 | hypothetical protein/autotransporter outer membrane beta‑barrel domain‑containing protein |
| * | * | ÷ | NZ_CP009273 | 1320848 | 1320905 | 58 | 2 [1] | [1] 2 | [yciQ] | [yciQ] |
| * | * | ÷ | NZ_CP009273 | 1781552 | 1781562 | 11 | 2 [1] | [0] 3 | ppsA/ppsR | phosphoenolpyruvate synthase/posphoenolpyruvate synthetase regulatory kinase/phosphorylase PpsR |
| * | * | ÷ | NZ_CP009273 | 1807537 | 1807567 | 31 | 2 [1] | [1] 3 | BW25113_RS09050/cedA | hypothetical protein/cell division activator CedA |
| * | * | ÷ | NZ_CP009273 | 2027066 | 2027107 | 42 | 2 [1] | [1] 2 | drpB/ompC | cell division protein DrpB/porin OmpC |
| * | * | ÷ | NZ_CP009273 | 2185908 | 2185923 | 16 | 2 [1] | [1] 6 | yehD/yehE | fimbrial protein/YehE family protein |
| * | * | ÷ | NZ_CP009273 | 2300310 | 2300324 | 15 | 6 [0] | [1] 2 | mqo/yojI | malate dehydrogenase (quinone)/microcin J25 efflux ABC transporter YojI |
| Unassigned new junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NZ_CP009273 | 360104 = | NA (NA) | 83 (2.510) | 35/166 | 0.0 | NA | intergenic (‑35/+251) | lacZ/BW25113_RS23320 | beta‑galactosidase/relaxase/mobilization nuclease domain‑containing protein |
| ? | NZ_CP009273 | = 360286 | NA (NA) | intergenic (‑217/+69) | lacZ/BW25113_RS23320 | beta‑galactosidase/relaxase/mobilization nuclease domain‑containing protein | |||||
| * | ? | NZ_CP009273 | 1203246 = | 1 (0.030) | 17 (0.640) | 13/134 | 0.5 | 97.7% | coding (290/630 nt) | BW25113_RS05990 | hypothetical protein |
| ? | NZ_CP009273 | 1205075 = | 0 (0.000) | coding (40/540 nt) | BW25113_RS06005 | phage tail protein | |||||
| * | ? | NZ_CP009273 | = 1203261 | 1 (0.030) | 8 (0.300) | 8/134 | 1.1 | 95.2% | coding (305/630 nt) | BW25113_RS05990 | hypothetical protein |
| ? | NZ_CP009273 | = 1205058 | 0 (0.000) | coding (57/540 nt) | BW25113_RS06005 | phage tail protein | |||||
| * | ? | NZ_CP009273 | = 1391494 | NA (NA) | 6 (0.180) | 4/164 | 2.2 | 100% | intergenic (+145/‑128) | BW25113_RS06980/ynaJ | IS5‑like element IS5 family transposase/DUF2534 family protein |
| ? | NZ_CP009273 | 1972747 = | 0 (0.000) | intergenic (‑293/‑487) | flhD/uspC | flagellar transcriptional regulator FlhD/universal stress protein UspC | |||||
| * | ? | NZ_CP009273 | = 1972751 | 1 (0.030) | 36 (1.090) | 23/166 | 0.2 | 97.3% | intergenic (‑297/‑483) | flhD/uspC | flagellar transcriptional regulator FlhD/universal stress protein UspC |
| ? | NZ_CP009273 | = 2283592 | NA (NA) | intergenic (‑68/‑387) | BW25113_RS11435/narP | IS5‑like element IS5 family transposase/nitrate/nitrite response regulator protein NarP | |||||