mutation predictions | marginal predictions | summary statistics | genome diff | command line log
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breseq version 0.35.4 revision f352f80f4bc9
mutation predictions | marginal predictions | summary statistics | genome diff | command line log |
| Marginal read alignment evidence (highest frequency 20 of 79 shown, sorted by frequency from high to low) | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NZ_CP009273 | 2,775,868 | 0 | A | C | 68.2% | 3.7 / 15.7 | 24 | V73G (GTA→GGA) | ypjA | adhesin‑like autotransporter YpjA/EhaD |
| * | NZ_CP009273 | 3,659,062 | 0 | C | A | 65.4% | ‑2.1 / 30.6 | 26 | A37S (GCG→TCG) | gadX | acid resistance transcriptional activator GadX |
| * | NZ_CP009273 | 799,325 | 0 | G | T | 63.2% | 3.7 / 26.5 | 19 | V123L (GTG→TTG) | ybhJ | hydratase |
| * | NZ_CP009273 | 1,825,607 | 0 | T | A | 61.5% | 2.4 / 13.1 | 13 | E211D (GAA→GAT) | astC | succinylornithine/acetylornithine transaminase |
| * | NZ_CP009273 | 1,725,055 | 0 | T | G | 61.1% | 13.7 / 20.0 | 18 | V571G (GTG→GGG) | lhr | ATP‑dependent helicase |
| * | NZ_CP009273 | 1,725,059 | 0 | T | G | 61.1% | 8.2 / 19.2 | 18 | G572G (GGT→GGG) | lhr | ATP‑dependent helicase |
| * | NZ_CP009273 | 645,910 | 0 | T | G | 60.0% | 3.2 / 14.2 | 15 | T13P (ACC→CCC) | citE | citrate (pro‑3S)‑lyase subunit beta |
| * | NZ_CP009273 | 645,912 | 0 | C | G | 57.1% | 3.5 / 10.1 | 14 | R12P (CGC→CCC) | citE | citrate (pro‑3S)‑lyase subunit beta |
| * | NZ_CP009273 | 645,916 | 0 | T | G | 57.1% | 1.2 / 12.0 | 14 | T11P (ACT→CCT) | citE | citrate (pro‑3S)‑lyase subunit beta |
| * | NZ_CP009273 | 1,598,494 | 0 | C | T | 56.5% | 4.8 / 27.5 | 23 | S64L (TCG→TTG) | lsrD | autoinducer 2 ABC transporter permease LsrD |
| * | NZ_CP009273 | 3,273,830 | 0 | A | C | 56.5% | 23.3 / 29.1 | 23 | T85T (ACA→ACC) | agaV | PTS N‑acetylgalactosamine transporter subunit IIB |
| * | NZ_CP009273 | 3,659,058 | 0 | T | C | 56.5% | 8.6 / 22.1 | 24 | D38G (GAT→GGT) | gadX | acid resistance transcriptional activator GadX |
| * | NZ_CP009273 | 645,920 | 0 | A | T | 56.2% | 1.4 / 16.0 | 16 | R9R (CGT→CGA) | citE | citrate (pro‑3S)‑lyase subunit beta |
| * | NZ_CP009273 | 1,074,924 | 0 | A | G | 54.5% | 2.1 / 11.1 | 11 | D55G (GAT→GGT) | putP | sodium/proline symporter PutP |
| * | NZ_CP009273 | 2,669,465 | 0 | C | A | 53.8% | ‑2.6 / 10.1 | 13 | L240F (TTG→TTT) | yphD | ABC transporter permease |
| * | NZ_CP009273 | 595,032 | 0 | T | G | 53.3% | ‑5.5 / 16.6 | 15 | V288G (GTG→GGG) | cusA | Cu(+)/Ag(+) efflux RND transporter permease subunit CusA |
| * | NZ_CP009273 | 595,035 | 0 | T | G | 53.3% | 2.2 / 16.1 | 15 | V289G (GTG→GGG) | cusA | Cu(+)/Ag(+) efflux RND transporter permease subunit CusA |
| * | NZ_CP009273 | 69,900 | 0 | A | C | 52.6% | 53.8 / 73.8 | 57 | V370G (GTG→GGG) | thiP | thiamine/thiamine pyrophosphate ABC transporter permease ThiP |
| * | NZ_CP009273 | 2,828,607 | 0 | A | C | 52.6% | 20.3 / 25.2 | 19 | G726G (GGT→GGG) | hypF | carbamoyltransferase HypF |
| * | NZ_CP009273 | 3,348,810 | 0 | A | C | 51.7% | 33.4 / 42.0 | 29 | T243P (ACC→CCC) | gltB | glutamate synthase large subunit |