| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NZ_CP009273 | 19796 = | NA (NA) | 72 (1.260) | 39/168 | 0.1 | 83.7% | intergenic (‑1/+15) | BW25113_RS25960/BW25113_RS00100 | fimbrial family protein/IS1‑like element IS1A family transposase |
| ? | NZ_CP009273 | = 3631088 | 14 (0.250) | coding (87/1500 nt) | pitA | inorganic phosphate transporter PitA | |||||
TGTCGTTCTCAAAATCGGTGGAGCTGCATGACAAAGTCATCGGGCATTATCTGAACATAAAACACTATCAATAAGTTGGAGTCATTACC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NZ_CP009273/19884‑19796‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑GATGGCTTCGTAGAACAGCACAAAAGCCAGTGCAAGCAATAATAACAGCCCGGTATGCAAATCCAGGCCAGCAAACAAATGTAGC < NZ_CP009273/3631088‑3631004 TGTCGTTCTCAAAATCGGTGGAGCTGCATGACAAAGTCATCGGGCATTATCTGAACATAAAACACTATCAATAAGTTGGAGTCATTACCG < 2:179593/90‑1TGTCGTTCTCAAAATCGGTGGAGCTGCATGACAAAGTCATCGGGCATTATCTGAACATAAAACACTATCAATAAGTTGGAGTCATTACCG < 1:797258/90‑1TGTCGTTCTCAAAATCGGTGGAGCTGCATGACAAAGTCATCGGGCATTATCTGAACATAAAACACTATCAATAAGTTGGAGTCATTACCG < 1:737868/90‑1TGTCGTTCTCAAAATCGGTGGAGCTGCATGACAAAGTCATCGGGCATTATCTGAACATAAAACACTATCAATAAGTTGGAGTCATTACCG < 1:1322578/90‑1TGTCGTTCTCAAAATCGGTGGAGCTGCATGACAAAGTCATCGGGCATTATCTGAACATAAAACACTATCAATAAGTTGGAGTCATTACCG < 1:66206/90‑1TGTCGTTCTCAAAATCGGTGGAGCTGCATGACAAAGTCATCGGGCATTATCTGAACATAAAACACTATCAATAAGTTGGAGTCATTACCG < 2:78468/90‑1 TCGTTCTCAAAATCGGTGGAGCTGCATGACAAAGTCATCGGGCATTATCTGAACATAAAACACTATCAATAAGTTGGAGTCATTACCGAT < 2:256170/90‑1 TCGTTCTCAAAATCGGTGGAGCTGCATGACAAAGTCATCGGGCATTATCTGAACATAAAACACTATCAATAAGTTGGAGTCATTACCGAT < 2:917082/90‑1 TCGTTCTCAAAATCGGTGGAGCTGCATGACAAAGTCATCGGGCATTATCTGAACATAAAACACTATCAATAAGTTGGAGTCATTACCGAT < 1:136395/90‑1 CGTTCTCAAAATCGGTGGAGCTGCATGACAAAGTCATCGGGCATTATCTGAACATAAAACACTATCAATAAGTTGGAGTCATTACCGATG < 1:384493/90‑1 GTTCTCAAAATCGGTGGAGCTGCATGACAAAGTCATCGGGCATTATCTGAACATAAAACACTATCAATAAGTTGGAGTCATTACCGATGG < 2:685503/90‑1 tcCTCAAAATCGGTGGAGCTGCATGACAAAGTCATCGGGCATTATCTGAACATAAAACACTATCAATAAGTTGGAGTCATTACCGATGGC < 1:772599/88‑1 TTCTCAAAATCGGTGGAGCTGCATGACAAAGTCATCGGGCATTATCTGAACATAAAACACTATCAATAAGTTGGAGTCATTACCGATGGC < 1:230528/90‑1 TTCTCAAAATCGGTGGAGCTGCATGACAAAGTCATCGGGCATTATCTGAACATAAAACACTATCAATAAGTTGGAGTCATTACCGATGGC < 1:886843/90‑1 TCTCAAAATCGGTGGAGCTGCATGACAAAGTCATCGGGCATTATCTGAACATAAAACACTATCAATAAGTTGGAGTCATTACCGATGGCT > 1:263656/1‑90 CAAAATCGGTGGAGCTGCATGACAAAGTCATCGGGCATTATCTGAACATAAAACACTATCAATAAGTTGGAGTCATTACCGATGGCTTCG > 2:1142288/1‑90 AAAATCGGTGGAGCTGCATGACAAAGTCATCGGGCATTATCTGAACATAAAACACTATCAATAAGTTGGAGTCATTACCGATGGCTTCGT < 2:1150937/90‑1 AAATCGGTGGAGCTGCATGACAAAGTCATCGGGCATTATCTGAACATAAAACACTATCAATAAGTTGGAGTCATTACCGATGGCTTCGTA > 1:935208/1‑90 CGGTGGAGCTGCATGACAAAGTCATCGGGCATTATCTGAACATAAAACACTATCAATAAGTTGGAGTCATTACCGATGGCTTCGTAGAAC < 1:1427657/90‑1 GTGGAGCTGCATGACAAAGTCATCGGGCATTATCTGAACATAAAACACTATCAATAAGTTGGAGTCATTACCGATGGCTTCGTAGAACAG > 1:412342/1‑90 GCTGCATGACAAAGTCATCGGGCATTATCTGAACATAAAACACTATCAATAAGTTGGAGTCATTACCGATGGCTTCGTAGAACAGCACAA < 2:1582238/90‑1 GCATGACAAAGTCATCGGGCATTATCTGAACATAAAACACTATCAATAAGTTGGAGTCATTACCGATGGCTTCGTAGAACAGCACAAAAG > 1:1338500/1‑90 ATGACAAAGTCATCGGGCATTATCTGAACATAAAACACTATCAATAAGTTGGAGTCATTACCGATGGCTTCGTAGAACAGCACAAAAGCC < 2:213059/90‑1 ACAAAGTCATCGGGCATTATCTGAACATAAAACACTATCAATAAGTTGGAGTCATTACCGATGGCTTCGTAGAACAGCACAAAAGCCAGT > 1:901228/1‑90 AGTCATCGGGCATTATCTGAACATAAAACACTATCAATAAGTTGGAGTCATTACCGATGGCTTCGTAGAACAGCACAAAAGCCAGTGCAA < 1:625083/90‑1 AGTCATCGGGCATTATCTGAACATAAAACACTATCAATAAGTTGGAGTCATTACCGATGGCTTCGTAGAACAGCACAAAAGCCAGTGCAA < 2:1536187/90‑1 GTCATCGGGCATTATCTGAACATAAAACACTATCAATAAGTTGGAGTCATTACCGATGGCTTCGTAGAACAGCACAAAAGCCAGTGCAAG < 2:1101109/90‑1 GTCATCGGGCATTATCTGAACATAAAACACTATCAATAAGTTGGAGTCATTACCGATGGCTTCGTAGAACAGCACAAAAGCCAGTGCAAG < 2:935208/90‑1 GTCATCGGGCATTATCTGAACATAAAACACTATCAATAAGTTGGAGTCATTACCGATGGCTTCGTAGAACAGCACAAAAGCCAGTGCAAG < 1:388615/90‑1 ATCGGGCATTATCTGAACATAAAACACTATCAATAAGTTGGAGTCATTACCGATGGCTTCGTAGAACAGCACAAAAGCCAGTGCAAGCAA > 2:1099319/1‑90 ATCGGGCATTATCTGAACATAAAACACTATCAATAAGTTGGAGTCATTACCGATGGCTTCGTAGAACAGCACAAAAGCCAGTGCAAGCAA > 1:704492/1‑90 ATCGGGCATTATCTGAACATAAAACACTATCAATAAGTTGGAGTCATTACCGATGGCTTCGTAGAACAGCACAAAAGCC > 2:979451/1‑79 ATCGGGCATTATCTGAACATAAAACACTATCAATAAGTTGGAGTCATTACCGATGGCTTCGTAGAACAGCACAAAAGCC < 1:979451/79‑1 ATCGGGCATTATCTGAACATAAAACACTATCAATAAGTTGGAGTCATTACCGATGGC < 2:731044/57‑1 ATCGGGCATTATCTGAACATAAAACACTATCAATAAGTTGGAGTCATTACCGATGGC > 1:731044/1‑57 ATTATCTGAACATAAAACACTATCAATAAGTTGGAGTCATTACCGATGGCTTCGTAGAACAGCACAAAAGCCAGTGCAAGCAATAATAAC < 1:618576/90‑1 ATTATCTGAACATAAAACACTATCAATAAGTTGGAGTCATTACCGATGGCTTCGTAGAACAGCACAAAAGCCAGTGCAAGCAATAATAAC > 2:1517944/1‑90 CTGAACATAAAACACTATCAATAAGTTGGAGTCATTACCGATGGCTTCGTAGAACAGCACAAAAGCCAGTGCAAGCAATAATAACAGCCC < 2:1338500/90‑1 TGAACATAAAACACTATCAATAAGTTGGAGTCATTACCGATGGCTTCGTAGAACAGCACAAAAGCCAGTGCAAGCAATAATAACAGCCCG < 2:1238639/90‑1 GAACATAAAACACTATCAATAAGTTGGAGTCATTACCGATGGCTTCGTAGAACAGCACAAAAGCCAGTGCAAGCAATAATAACAGCCCGG > 2:1569863/1‑90 GAACATAAAACACTATCAATAAGTTGGAGTCATTACCGATGGCTTCGTAGAACAGCACAAAAGCCAGTGCAAGCAATAATAACAGCCCGG > 1:158679/1‑90 GAACATAAAACACTATCAATAAGTTGGAGTCATTACCGATGGCTTCGTAGAACAGCACAAAAGCCAGTGCAAGCAATAATAACAGCCCGG < 2:59290/90‑1 GAACATAAAACACTATCAATAAGTTGGAGTCATTACCGATGGCTTCGTAGAACAGCACAAAAGCCAGTGCAAGCAATAATAACAGCCCGG > 2:548847/1‑90 GAACATAAAACACTATCAATAAGTTGGAGTCATTACCGATGGCTTCGTAGAACAGCACAAAAGCCAGTGCAAGCAATAATAACAGCCCGG < 1:744954/90‑1 TAAAACACTATCAATAAGTTGGAGTCATTACCGATGGCTTCGTAGAACAGCACAAAAGCCAGTGCAAGCAATAATAACAGCCCGGTATGC < 2:602383/90‑1 TAAAACACTATCAATAAGTTGGAGTCATTACCGATGGCTTCGTAGAACAGCACAAAAGCCAGTGCAAGCAATAATAACAGCCCGGTATGC > 1:77618/1‑90 AAAACACTATCAATAAGTTGGAGTCATTACCGATGGCTTCGTAGAACAGCACAAAAGCCAGTGCAAGCAATAATAACAGCCCGGTATGCA < 1:1374074/90‑1 AAAACACTATCAATAAGTTGGAGTCATTACCGATGGCTTCGTAGAACAGCACAAAAGCCAGTGCAAGCAATAATAACAGCCCGGTATGCA < 2:1261858/90‑1 CACTATCAATAAGTTGGAGTCATTACCGATGGCTTCGTAGAACAGCACAAAAGCCAGTGCAAGCAATAATAACAGCCCGGTATGCAAATC > 2:1483080/1‑90 CTATCAATAAGTTGGAGTCATTACCGATGGCTTCGTAGAACAGCACAAAAGCCAGTGCAAGCAATAATAACAGCCCGGTATGCAAATCCA > 2:604816/1‑90 CTATCAATAAGTTGGAGTCATTACCGATGGCTTCGTAGAACAGCACAAAAGCCAGTGCAAGCAATAATAACAGCCCGGTATGCAAATCCA > 1:396836/1‑90 CTATCAATAAGTTGGAGTCATTACCGATGGCTTCGTAGAACAGCACAAAAGCCAGTGCAAGCAATAATAAC < 2:564332/71‑1 CTATCAATAAGTTGGAGTCATTACCGATGGCTTCGTAGAACAGCACAAAAGCCAGTGCAAGCAATAATAAC > 1:564332/1‑71 AGTTGGAGTCATTACCGATGGCTTCGTAGAACAGCACAAAAGCCAGTGCAAGCAATAATAACAGCCCGGTATGCAAATCCAGGCCAGCAA < 2:412342/90‑1 TGGAGTCATTACCGATGGCTTCGTAGAACAGCACAAAAGCCAGTGCAAGCAATAATAACAGCCCGGTATGCAAATCCAGGCCAGCAAACA > 1:607217/1‑90 TGGAGTCATTACCGATGGCTTCGTAGAACAGCACAAAAGCCAGTGCAAGCAATAATAACAGCCCGGTATGCAAATCCAGGCCAGCAAACA > 2:1450616/1‑90 TGGAGTCATTACCGATGGCTTCGTAGAACAGCACAAAAGCCAGTGCAAGCAATAATAACAGCCCGGTATGCAAATCCAGGCCAGCAAACA > 2:1101077/1‑90 TGGAGTCATTACCGATGGCTTCGTAGAACAGCACAAAAGCCAGTGCAAGCAATAATAACAGCCCGGTATGCAAATCCAGGCCAGCAAACA > 2:1016095/1‑90 TGGAGTCATTACCGATGGCTTCGTAGAACAGCACAAAAGCCAGTGCAAGCAATAATAACAGCCCGGTATGCAAATCCAGGCCAGCAAACA < 2:1476352/90‑1 GAGTCATTACCGATGGCTTCGTAGAACAGCACAAAAGCCAGTGCAAGCAATAATAACAGCCCGGTATGCAAATCCAGGCCAGCAAACAAA > 2:302628/1‑90 GAGTCATTACCGATGGCTTCGTAGAACAGCACAAAAGCCAGTGCAAGCAATAATAACAGCCCGGTATGCAAATCCAGGCCAGCAAACAAA > 2:513236/1‑90 GAGTCATTACCGATGGCTTCGTAGAACAGCACAAAAGCCAGTGCAAGCAATAATAACAGCCCGGTATGCAAATCCAGGCCAGCAAACAAA < 1:1450616/90‑1 GAGTCATTACCGATGGCTTCGTAGAACAGCACAAAAGCCAGTGCAAGCAATAATAACAGCCCGGTATGCAAATCCAGGCCAGCAAACAAA > 2:713213/1‑90 TCATTACCGATGGCTTCGTAGAACAGCACAAAAGCCAGTGCAAGCAATAATAACAGCCCGGTATGCAAATCCAGGCCAGCAAACAAATGT < 1:212797/90‑1 CATTACCGATGGCTTCGTAGAACAGCACAAAAGCCAGTGCAAGCAATAATAACAGCCCGGTATGCAAATCCAGGCCAGCAAACAAATGTA < 1:731919/90‑1 CATTACCGATGGCTTCGTAGAACAGCACAAAAGCCAGTGCAAGCAATAATAACAGCCCGGTATGCAAATCCAGGCCAGCAAACAAATGTA > 1:682736/1‑90 TTACCGATGGCTTCGTAGAACAGCACAAAAGCCAGTGCAAGCAATAATAACAGCCCGGTATGCAAATCCAGGCCAGCAAACAAATGTAGC > 1:989646/1‑90 TTACCGATGGCTTCGTAGAACAGCACAAAAGCCAGTGCAAGCAATAATAACAGCCCGGTATGCAAATCCAGGCCAGCAAACAAATGTAGC > 2:1383624/1‑90 TTACCGATGGCTTCGTAGAACAGCACAAAAGCCAGTGCAAG < 2:668735/41‑1 TTACCGATGGCTTCGTAGAACAGCACAAAAGCCAGTGCAAG > 1:668735/1‑41 CGATGGCTTCGTAGAACAGCACAAAAGCCAGTGCAAGC < 2:1495797/38‑1 CGATGGCTTCGTAGAACAGCACAAAAGCCAGTGCAAGC > 1:1495797/1‑38 TGTCGTTCTCAAAATCGGTGGAGCTGCATGACAAAGTCATCGGGCATTATCTGAACATAAAACACTATCAATAAGTTGGAGTCATTACC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NZ_CP009273/19884‑19796‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑GATGGCTTCGTAGAACAGCACAAAAGCCAGTGCAAGCAATAATAACAGCCCGGTATGCAAATCCAGGCCAGCAAACAAATGTAGC < NZ_CP009273/3631088‑3631004 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |