| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NZ_CP009273 | 19796 = | NA (NA) | 72 (1.260) | 39/168 | 0.1 | 83.7% | intergenic (‑1/+15) | BW25113_RS25960/BW25113_RS00100 | fimbrial family protein/IS1‑like element IS1A family transposase |
| ? | NZ_CP009273 | = 3631088 | 14 (0.250) | coding (87/1500 nt) | pitA | inorganic phosphate transporter PitA | |||||
Only 100 of 160 total aligned reads displayed.
CCTATGCTACATTTGTTTGCTGGCCTGGATTTGCATACCGGGCTGTTATTATTGCTTGCACTGGCTTTTGTGCTGTTCTACGAAGCCATCAATGGTTTCCATGACACAGCCAACGCCGTGGCAACCGTTATCTATACCCGCGCGATGCGTTCTCAGCTCGCCGTGGTTATGGCGGCGGT > NZ_CP009273/3630999‑3631177 | ccTATGCTACATTTGTTTGCTGGCCTGGATTTGCATACCGGGCTGTTATTATTGCTTGCACTGGCTTTTGTGCTGTTCTACGAAGCCATc > 1:1477777/1‑90 (MQ=255) gacagctgatagaaacagaagccactggagcacctcaaaaacaccatcatacactaaatcagtaagttggcagcatcacCGAAGCCATCa > 2:1101333‑M2/80‑90 (MQ=255) gacagctgatagaaacagaagccactggagcacctcaaaaacaccatcatacactaaatcagtaagttggcagcatcacCGAAGCCATCa > 2:761877‑M2/80‑90 (MQ=255) gctgatagaaacagaagccactggagcacctcaaaaacaccatcatacactaaatcagtaagttggcagcatcacCGAAGCCATCAATgg < 2:167096‑M2/15‑1 (MQ=255) gctgatagaaacagaagccactggagcacctcaaaaacaccatcatacactaaatcagtaagttggcagcatcacCGAAGCCATCAATgg < 1:1460315‑M2/15‑1 (MQ=255) gCTACATTTGTTTGCTGGCCTGGATTTGCATACCGGGCTGTTATTATTGCTTGCACTGGCTTTTGTGCTGTTCTACGAAGCCATCggtaa > 2:1383624‑M2/1‑85 (MQ=255) tgatagaaacagaagccactggagcacctcaaaaacaccatcatacactaaatcagtaagttggcagcatcacCGAAGCCATCAATGGtt > 2:174324‑M2/74‑90 (MQ=255) tgatagaaacagaagccactggagcacctcaaaaacaccatcatacactaaatcagtaagttggcagcatcacCGAAGCCATCAATGGtt < 1:48471‑M2/17‑1 (MQ=255) tACATTTGTTTGCTGGCCTGGATTTGCATACCGGGCTGTTATTATTGCTTGCACTGGCTTTTGTGCTGTTCTACGAAGCCATCggtaatg > 1:682736‑M2/1‑83 (MQ=255) tACATTTGTTTGCTGGCCTGGATTTGCATACCGGGCTGTTATTATTGCTTGCACTGGCTTTTGTGCTGTTCTACGAAGCCATCggtaatg < 1:731919‑M2/90‑8 (MQ=255) tttgtttgCTGGCCTGGATTTGCATACCGGGCTGTTATTATTGCTTGCACTGGCTTTTGTGCTGTTCTACGAAGCCATCggtaatgactc < 1:1450616‑M2/90‑12 (MQ=255) tttgtttgCTGGCCTGGATTTGCATACCGGGCTGTTATTATTGCTTGCACTGGCTTTTGTGCTGTTCTACGAAGCCATCggtaatgactc > 2:713213‑M2/1‑79 (MQ=255) tttgtttgCTGGCCTGGATTTGCATACCGGGCTGTTATTATTGCTTGCACTGGCTTTTGTGCTGTTCTACGAAGCCATCggtaatgactc > 2:302628‑M2/1‑79 (MQ=255) tttgtttgCTGGCCTGGATTTGCATACCGGGCTGTTATTATTGCTTGCACTGGCTTTTGTGCTGTTCTACGAAGCCATCggtaatgactc > 2:513236‑M2/1‑79 (MQ=255) agaaacagaagccactggagcacctcaaaaacaccatcatacactaaatcagtaagttggcagcatcacCGAAGCCATCAATGGTTTCCa < 1:1563504‑M2/21‑1 (MQ=255) tgtttgCTGGCCTGGATTTGCATACCGGGCTGTTATTATTGCTTGCACTGGCTTTTGTGCTGTTCTACGAAGCCATCggtaatgactcca > 2:1016095‑M2/1‑77 (MQ=255) tgtttgCTGGCCTGGATTTGCATACCGGGCTGTTATTATTGCTTGCACTGGCTTTTGTGCTGTTCTACGAAGCCATCggtaatgactcca > 1:607217‑M2/1‑77 (MQ=255) tgtttgCTGGCCTGGATTTGCATACCGGGCTGTTATTATTGCTTGCACTGGCTTTTGTGCTGTTCTACGAAGCCATCggtaatgactcca > 2:1450616‑M2/1‑77 (MQ=255) tgtttgCTGGCCTGGATTTGCATACCGGGCTGTTATTATTGCTTGCACTGGCTTTTGTGCTGTTCTACGAAGCCATCggtaatgactcca < 2:1476352‑M2/90‑14 (MQ=255) ttgCTGGCCTGGATTTGCATACCGGGCTGTTATTATTGCTTGCACTGGCTTTTGTGCTGTTCTACGAAGCCATCggtaatgactccaact < 2:412342‑M2/90‑17 (MQ=255) gaagccactggagcacctcaaaaacaccatcatacactaaatcagtaagttggcagcatcacCGAAGCCATCAATGGTTTCCATGAcaca > 1:197060‑M2/63‑90 (MQ=255) tGGATTTGCATACCGGGCTGTTATTATTGCTTGCACTGGCTTTTGTGCTGTTCTACGAAGCCATCggtaatgactccaacttattgatag > 1:396836‑M2/1‑65 (MQ=255) tGGATTTGCATACCGGGCTGTTATTATTGCTTGCACTGGCTTTTGTGCTGTTCTACGAAGCCATCggtaatgactccaacttattgatag > 2:604816‑M2/1‑65 (MQ=255) ctggagcacctcaaaaacaccatcatacactaaatcagtaagttggcagcatcacCGAAGCCATCAATGGTTTCCATGACACAGCCAACg > 2:603515‑M2/56‑90 (MQ=255) gcacctcaaaaacaccatcatacactaaatcagtaagttggcagcatcacCGAAGCCATCAATGGTTTCCATGACACAGCCAACGCCGTg > 2:270600‑M2/51‑90 (MQ=255) tGCATACCGGGCTGTTATTATTGCTTGCACTGGCTTTTGTGCTGTTCTACGAAGCCATCggtaatgactccaacttattgatagtgtttt < 2:1261858‑M2/90‑32 (MQ=255) tGCATACCGGGCTGTTATTATTGCTTGCACTGGCTTTTGTGCTGTTCTACGAAGCCATCggtaatgactccaacttattgatagtgtttt < 1:1374074‑M2/90‑32 (MQ=255) gCATACCGGGCTGTTATTATTGCTTGCACTGGCTTTTGTGCTGTTCTACGAAGCCATCggtaatgactccaacttattgatagtgtttta > 1:77618‑M2/1‑58 (MQ=255) acctcaaaaacaccatcatacactaaatcagtaagttggcagcatcacCGAAGCCATCAATGGTTTCCATGACACAGCCAACGCCGTGGc < 2:96881‑M2/42‑1 (MQ=255) acctcaaaaacaccatcatacactaaatcagtaagttggcagcatcacCGAAGCCATCAATGGTTTCCATGACACAGCCAACGCCGTGGc < 2:1611828‑M2/42‑1 (MQ=255) acctcaaaaacaccatcatacactaaatcagtaagttggcagcatcacCGAAGCCATCAATGGTTTCCATGACACAGCCAACGCCGTGGc > 2:14792‑M2/49‑90 (MQ=255) acctcaaaaacaccatcatacactaaatcagtaagttggcagcatcacCGAAGCCATCAATGGTTTCCATGACACAGCCAACGCCGTGGc < 2:831225‑M2/42‑1 (MQ=255) acctcaaaaacaccatcatacactaaatcagtaagttggcagcatcacCGAAGCCATCAATGGTTTCCATGACACAGCCAACGCCGTGGc < 1:1614397‑M2/42‑1 (MQ=255) acctcaaaaacaccatcatacactaaatcagtaagttggcagcatcacCGAAGCCATCAATGGTTTCCATGACACAGCCAACGCCGTGGc > 1:785838‑M2/49‑90 (MQ=255) cctcaaaaacaccatcatacactaaatcagtaagttggcagcatcacTGAAGCCATCAATGGTTTCCATGACACAGCCAACGCCGTGgcg < 2:197060‑M2/43‑2 (MQ=255) cctcaaaaacaccatcatacactaaatcagtaagttggcagcatcacCGAAGCCATCAATGGTTTCCATGACACAGCCAACGCCGTGGCa < 2:1399709‑M2/43‑1 (MQ=255) cctcaaaaacaccatcatacactaaatcagtaagttggcagcatcacCGAAGCCATCAATGGTTTCCATGACACAGCCAACGCCGTGGCa < 2:1206403‑M2/43‑1 (MQ=255) cATACCGGGCTGTTATTATTGCTTGCACTGGCTTTTGTGCTGTTCTACGAAGCCATCAATGGTTTCCATGACACAGCCAACGCCGTGGCa < 2:486763/90‑1 (MQ=255) tcaaaaacaccatcatacactaaatcagtaagttggcagcatcacCGAAGCCATCAATGGTTTCCATGACACAGCCAACGCCGTGGCAAc > 1:1617019‑M2/46‑90 (MQ=255) ccGGGCTGTTATTATTGCTTGCACTGGCTTTTGTGCTGTTCTACGAAGCCATCggtaatgactccaacttattgatagtgttttatgttc < 1:744954‑M2/90‑38 (MQ=255) ccGGGCTGTTATTATTGCTTGCACTGGCTTTTGTGCTGTTCTACGAAGCCATCggtaatgactccaacttattgatagtgttttatgttc < 2:59290‑M2/90‑38 (MQ=255) ccGGGCTGTTATTATTGCTTGCACTGGCTTTTGTGCTGTTCTACGAAGCCATCggtaatgactccaacttattgatagtgttttatgttc > 2:1569863‑M2/1‑53 (MQ=255) cGGGCTGTTATTATTGCTTGCACTGGCTTTTGTGCTGTTCTACGAAGCCATCggtaatgactccaacttattgatagtgttttatgttca < 2:1238639‑M2/90‑39 (MQ=255) aaaacaccatcatacactaaatcagtaagttggcagcatcacCGAAGCCATCAATGGTTTCCATGACACAGCCAACGCCGTGGCAACCGt < 1:516349‑M2/48‑1 (MQ=255) aaaacaccatcatacactaaatcagtaagttggcagcatcacCGAAGCCATCAATGGTTTCCATGACACAGCCAACGCCGTGGCAACCGt < 1:812043‑M2/48‑1 (MQ=255) aaaacaccatcatacactaaatcagtaagttggcagcatcacCGAAGCCATCAATGGTTTCCATGACACAGCCAACGCCGTGGCAACCGt < 2:1611361‑M2/48‑1 (MQ=255) aaaacaccatcatacactaaatcagtaagttggcagcatcacCGAAGCCATCAATGGTTTCCATGACACAGCCAACGCCGTGGCAACCGt < 1:1265405‑M2/48‑1 (MQ=255) aaaacaccatcatacactaaatcagtaagttggcagcatcacCGAAGCCATCAATGGTTTCCATGACACAGCCAACGCCGTGGCAACCGt < 2:786303‑M2/48‑1 (MQ=255) aacaccatcatacactaaatcagtaagttggcagcatcacCGAAGCCATCAATGGTTTCCATGACACAGCCAACGCCGTGGCAACCGTTa < 1:493450‑M2/50‑1 (MQ=255) accatcatacactaaatcagtaagttggcagcatcacCGAAGCCATCAATGGTTTCCATGACACAGCCAACGCCGTGGc < 2:1623492‑M2/42‑1 (MQ=255) accatcatacactaaatcagtaagttggcagcatcacCGAAGCCATCAATGGTTTCCATGACACAGCCAACGCCGTGGCAACCGTTATCt > 1:664971‑M2/38‑90 (MQ=255) accatcatacactaaatcagtaagttggcagcatcacCGAAGCCATCAATGGTTTCCATGACACAGCCAACGCCGTGGCAACCGTTATCt > 2:1392802‑M2/38‑90 (MQ=255) gTTATTATTGCTTGCACTGGCTTTTGTGCTGTTCTACGAAGCCATCggtaatgactccaacttattgatag > 1:564332‑M2/1‑46 (MQ=255) gTTATTATTGCTTGCACTGGCTTTTGTGCTGTTCTACGAAGCCATCggtaatgactccaacttattgatag < 2:564332‑M2/71‑26 (MQ=255) atcatacactaaatcagtaagttggcagcatcacCGAAGCCATCAATGGTTTCCATGACACAGCCAACGCCGTGGCAACCGTTATCtata > 1:705626‑M2/35‑90 (MQ=255) atcatacactaaatcagtaagttggcagcatcacCGAAGCCATCAATGGTTTCCATGACACAGCCAACGCCGTGGCAACCGTTATCtata > 1:1500348‑M2/35‑90 (MQ=255) tcatacactaaatcagtaagttggcagcatcacCGAAGCCATCAATGGTTTCCATGACACAGCCAACGCCGTGGCa > 2:1562756‑M2/34‑76 (MQ=255) ttgcttgcACTGGCTTTTGTGCTGTTCTACGAAGCCATCggtaatgactccaacttattgatagtgttttatgttcagataatgcccgat > 2:1099319‑M2/1‑39 (MQ=255) tgcttgcACTGGCTTTTGTGCTGTTCTACGAAGCCATCAATGGTTTCCATGACACAGCCAACGCCGTGGCAACCGt < 1:967972/76‑1 (MQ=255) gcttgcACTGGCTTTTGTGCTGTTCTACGAAGCCATCg < 2:1495797‑M2/38‑2 (MQ=255) gcttgcACTGGCTTTTGTGCTGTTCTACGAAGCCATCg > 1:1495797‑M2/1‑37 (MQ=255) cttgcACTGGCTTTTGTGCTGTTCTACGAAGCCATCggtaatgactccaacttattgatagtgttttatgttcagataatgcccgatgac < 2:1101109‑M2/90‑55 (MQ=255) cttgcACTGGCTTTTGTGCTGTTCTACGAAGCCATCggtaa < 2:668735‑M2/41‑6 (MQ=255) cttgcACTGGCTTTTGTGCTGTTCTACGAAGCCATCggtaa > 1:668735‑M2/1‑36 (MQ=255) ttgcACTGGCTTTTGTGCTGTTCTACGAAGCCATCggtaatgactccaacttattgatagtgttttatgttcagataatgcccgatgact < 2:1536187‑M2/90‑56 (MQ=255) ttgcACTGGCTTTTGTGCTGTTCTACGAAGCCATCggtaatgactccaacttattgatagtgttttatgttcagataatgcccgatgact < 1:625083‑M2/90‑56 (MQ=255) aaatcagtaagttggcagcatcacCGAAGCCATCAATGGTTTCCATGACACAGCCAACGCCGTGGCAACCGt > 1:391880‑M2/25‑72 (MQ=255) aaatcagtaagttggcagcatcacCGAAGCCATCAATGGTTTCCATGACACAGCCAACGCCGTGGCAACCGTTATCTATACCCGCGCGAt > 2:1508118‑M2/25‑90 (MQ=255) aaatcagtaagttggcagcatcacCGAAGCCATCAATGGTTTCCATGACACAGCCAACGCCGTGGCAACCGTTATCTATACCCGCGCGAt > 1:593727‑M2/25‑90 (MQ=255) aaatcagtaagttggcagcatcacCGAAGCCATCAATGGTTTCCATGACACAGCCAACGCCGTGGCAACCGTTATCTATACCCGCGCGAt > 1:70994‑M2/25‑90 (MQ=255) aCTGGCTTTTGTGCTGTTCTACGAAGCCATCggtaatgactccaacttattgatagtgttttatgttcagataatgcccgatgactttgt > 1:901228‑M2/1‑31 (MQ=255) gtaagttggcagcatcacCGAAGCCATCAATGGTTTCCATGACACAGCCAACGCCGTGGCAACCGt < 1:938650‑M2/48‑1 (MQ=255) gtaagttggcagcatcacCGAAGCCATCAATGGTTTCCATGACACAGCCAACGCCGTGGCAACCGt > 2:938650‑M2/19‑66 (MQ=255) gtaagttggcagcatcacCGAAGCCATCAATGGTTTCCATGACACAGCCAACGCCGTGGCAACCGTTATCTATACCCGCGCGATGCGTtc > 1:204827‑M2/19‑90 (MQ=255) gtaagttggcagcatcacCGAAGCCATCAATGGTTTCCATGACACAGCCAACGCCGTGGCAACCGTTATCTATACCCGCGCGATGCGTtc > 2:1294171‑M2/19‑90 (MQ=255) gtaagttggcagcatcacCGAAGCCATCAATGGTTTCCATGACACAGCCAACGCCGTGGCAACCGTTATCTATACCCGCGCGATGCGTtc > 1:1163172‑M2/19‑90 (MQ=255) ggCTTTTGTGCTGTTCTACGAAGCCATCggtaatgactccaacttattgatagtgttttatgttcagataatgcccgatgactttgtcat < 2:213059‑M2/90‑63 (MQ=255) ggCTTTTGTGCTGTTCTACGAAGCCATCggtaatgactccaacttattgatagtgttttatgttcagataatgcccgat < 1:979451‑M2/79‑52 (MQ=255) cTTTTGTGCTGTTCTACGAAGCCATCggtaatgactccaacttattgatagtgttttatgttcagataatgcccgatgactttgtcatgc > 1:1338500‑M2/1‑26 (MQ=255) aagttggcagcatcacCGAAGCCATCAATGGTTTCCATGACACAGCCAACGCCGTGGCa > 2:1096510‑M2/17‑59 (MQ=255) aagttggcagcatcacCGAAGCCATCAATGGTTTCCATGACACAGCCAACGCCGTGGCa < 1:1096510‑M2/43‑1 (MQ=255) ttGTGCTGTTCTACGAAGCCATCAATGGTTTCCATGACACAGCCAACGCCGTGGCAACCGTTATCTATACCCGCGCGATGCGTTCTCAGc < 1:1053657/90‑1 (MQ=255) tggcagcatcacCGAAGCCATCAATGGTTTCCATGACACAGCCAACGCCGTGGCAACCGTTATCTATACCCGCGCGATGCGTTCTCAGCt > 2:138439‑M2/13‑90 (MQ=255) tcacCGAAGCCATCAATGGTTTCCATGACACAGCCAACGCCGTGGCAACCGt > 1:62639‑M2/5‑52 (MQ=255) cGAAGCCATCggtaatgactccaacttattgatagtgttttatgttcagataatgcccgatgactttgtcatgcagctccaccgattttg > 2:1142288‑M2/1‑10 (MQ=255) gAAGCCATCAATGGTTTCCATGACACAGCCAACGCCGTGGCAACCGTTATCTATACCCGCGCGATGCGTTCTCAGCTCGCCGTGGTTATg < 1:1392802/90‑1 (MQ=255) gCCATCggtaatgactccaacttattgatagtgttttatgttcagataatgcccgatgactttgtcatgcagctccaccgattttgagaa < 1:230528‑M2/90‑85 (MQ=255) gCCATCggtaatgactccaacttattgatagtgttttatgttcagataatgcccgat < 2:731044‑M2/57‑52 (MQ=255) gCCATCAATGGTTTCCATGACACAGCCAACGCCGTGGCAACCGTTATCTATACCCGCGCGATGCGTTCTCAGCTCGCCGTGGTTATggcg > 1:364316/1‑90 (MQ=255) cATCggtaatgactccaacttattgatagtgttttatgttcagataatgcccgatgactttgtcatgcagctccaccgattttgagaacg < 1:384493‑M2/90‑87 (MQ=255) cATCAATGGTTTCCATGACACAGCCAACGCCGTGGCAACCGt < 1:95215/42‑1 (MQ=255) cATCAATGGTTTCCATGACACAGCCAACGCCGTGGCAACCGt > 2:95215/1‑42 (MQ=255) cATCAATGGTTTCCATGACACAGCCAACGCCGTGGCAACCGTTATCTATACCCGCGCGATGCGTTCTCAGCTCGCCGTGGTTATggcggc < 2:1315149/90‑1 (MQ=255) cATCAATGGTTTCCATGACACAGCCAACGCCGTGGCAACCGTTATCTATACCCGCGCGATGCGTTCTCAGCTCGCCGTGGTTATggcggc < 1:1239983/90‑1 (MQ=255) cATCAATGGTTTCCATGACACAGCCAACGCCGTGGCAACCGTTATCTATACCCGCGCGATGCGTTCTCAGCTCGCCGTGGTTATggcggc > 2:776328/1‑90 (MQ=255) aTCggtaatgactccaacttattgatagtgttttatgttcagataatgcccgatgactttgtcatgcagctccaccgattttgagaacga < 2:917082‑M2/90‑88 (MQ=255) aTCggtaatgactccaacttattgatagtgttttatgttcagataatgcccgatgactttgtcatgcagctccaccgattttgagaacga < 2:256170‑M2/90‑88 (MQ=255) tCAATGGTTTCCATGACACAGCCAACGCCGTGGCAACCGTTATCTATACCCGCGCGATGCGTTCTCAGCTCGCCGTGGTTATGGcggcgg < 1:829921/90‑1 (MQ=255) cggtaatgactccaacttattgatagtgttttatgttcagataatgcccgatgactttgtcatgcagctccaccgattttgagaacgaca < 1:1322578‑M2/90‑90 (MQ=255) cggtaatgactccaacttattgatagtgttttatgttcagataatgcccgatgactttgtcatgcagctccaccgattttgagaacgaca < 1:737868‑M2/90‑90 (MQ=255) | CCTATGCTACATTTGTTTGCTGGCCTGGATTTGCATACCGGGCTGTTATTATTGCTTGCACTGGCTTTTGTGCTGTTCTACGAAGCCATCAATGGTTTCCATGACACAGCCAACGCCGTGGCAACCGTTATCTATACCCGCGCGATGCGTTCTCAGCTCGCCGTGGTTATGGCGGCGGT > NZ_CP009273/3630999‑3631177 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 31 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |