| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NZ_CP009273 | 3576789 = | NA (NA) | 82 (1.460) | 32/166 | 0.3 | 88.3% | coding (392/417 nt) | BW25113_RS17825 | YrhA family protein |
| ? | NZ_CP009273 | 3631079 = | 11 (0.190) | coding (78/1500 nt) | pitA | inorganic phosphate transporter PitA | |||||
Only 100 of 103 total aligned reads displayed.
GAACAGGAGGGACAGCTGATAGAAACAGAAGCCACTGGAGCACCTCAAAAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACc‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NZ_CP009273/3576877‑3576789‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑CGAAGCCATCAATGGTTTCCATGACACAGCCAACGCCGTGGCAACCGTTATCTATACCCGCGCGATGCGTTCTCAGCTCGCC > NZ_CP009273/3631079‑3631160 GAACAGGAGGGACAGCTGATAGAAACAGAAGCCACTGGAGCCCCTCAAAAACAGCATCATACACTAAATCAGTAAGTTGGCAGCATCACC < 1:1490217/90‑1GAACAGGAGGGACAGCTGATAGAAACAGAAGCCACTGGAGCACCTCAAAAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACC > 2:909711/1‑90GAACAGGAGGGACAGCTGATAGAAACAGAAGCCACTGGAGCACCTCAAAAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACC > 2:1319006/1‑90GAACAGGAGGGACAGCTGATAGAAACAGAAGCCACTGGAGCACCTCAAAAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACC > 2:1354689/1‑90GAACAGGAGGGACAGCTGATAGAAACAGAAGCCACTGGAGCACCTCAAAAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACC > 2:1009456/1‑90GAACAGGAGGGACAGCTGATAGAAACAGAAGCCACTGGAGCACCTCAAAAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACC > 2:1500870/1‑90GAACAGGAGGGACAGCTGATAGAAACAGAAGCCACTGGAGCACCTCAAAAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACC < 2:1556900/90‑1GAACAGGAGGGACAGCTGATAGAAACAGAAGCCACTGGAGCACCTCAAAAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACC > 1:738135/1‑90GAACAGGAGGGACAGCTGATAGAAACAGAAGCCACTGGAGCACCTCAAAAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACC < 2:184173/90‑1GAACAGGAGGGACAGCTGATAGAAACAGAAGCCACTGGAGCACCTCAAAAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACC < 1:542337/90‑1GAACAGGAGGGACAGCTGATAGAAACAGAAGCCACTGGAGCACCTCAAAAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACC < 2:257345/90‑1GAACAGGAGGGACAGCTGATAGAAACAGAAGCCACTGGAGCACCTCAAAAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACC > 1:493055/1‑90GAACAGGAGGGACAGCTGATAGAAACAGAAGCCACTGGAGCACCTCAAAAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACC > 1:478856/1‑90GAACAGGAGGGACAGCTGATAGAAACAGAAGCCACTGGAGCACCTCAAAAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACC < 1:373382/90‑1GAACAGGAGGGACAGCTGATAGAAACAGAAGCCACTGGAGCACCTCAAAAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACC > 1:1644374/1‑90GAACAGGAGGGACAGCTGATAGAAACAGAAGCCACTGGAGCACCTCAAAAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACC > 2:611741/1‑90 AACAGGAGGGACAGCTGATAGAAACAGAAGCCACTGGAGCACCTCAAAAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCG < 2:818063/90‑1 AACAGGAGGGACAGCTGATAGAAACAGAAGCCACTGGAGCACCTCAAAAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCG < 1:69500/90‑1 ACAGGAGGGACAGCTGATAGAAACAGAAGCCACTGGAGCACCTCAAAAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCGA > 2:846027/1‑90 cGGATGGACAGCTGATAGAAACAGAAGCCACTGGAGCACCTGAAAAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCGAAG < 1:910279/89‑1 AGGAGGGACAGCTGATAGAAACAGAAGCCACTGGAGCACCTCAAAAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCGAAG < 2:327348/90‑1 AGGAGGGACAGCTGATAGAAACAGAAGCCACTGGAGCACCTCAAAAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCGAAG > 1:327348/1‑90 AGGAGGGACAGCTGATAGAAACAGAAGCCACTGGAGCACCTCAAAAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCGAAG < 1:161732/90‑1 AGGAGGGACAGCTGATAGAAACAGAAGCCACTGGAGCACCTCAAAAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCGAAG < 2:682123/90‑1 AGGAGGGACAGCTGATAGAAACAGAAGCCACTGGAGCACCTCAAAAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCGAAG > 2:459308/1‑90 GGAGGGACAGCTGATAGAAACAGAAGCCACTGGAGCACCTCAAAAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACC < 2:1530651/85‑1 GGAGGGACAGCTGATAGAAACAGAAGCCACTGGAGCACCTCAAAAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACC > 1:1530651/1‑85 GACAGCTGATAGAAACAGAAGCCACTGGAGCACCTCAAAAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCGAAGCCATCA > 2:761877/1‑90 GACAGCTGATAGAAACAGAAGCCACTGGAGCACCTCAAAAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCGAAGCCATCA > 2:1614397/1‑90 GACAGCTGATAGAAACAGAAGCCACTGGAGCACCTCAAAAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCGAAGCCATCA > 2:1101333/1‑90 GCTGATAGAAACAGAAGCCACTGGAGCACCTCAAAAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCGAAGCCATCAATGG < 1:1460315/90‑1 GCTGATAGAAACAGAAGCCACTGGAGCACCTCAAAAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCGAAGCCATCAATGG < 2:167096/90‑1 TGATAGAAACAGAAGCCACTGGAGCACCTCAAAAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCGAAGCCATCAATGGTT > 2:174324/1‑90 TGATAGAAACAGAAGCCACTGGAGCACCTCAAAAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCGAAGCCATCAATGGTT < 2:1260321/90‑1 TGATAGAAACAGAAGCCACTGGAGCACCTCAAAAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCGAAGCCATCAATGGTT < 1:48471/90‑1 AGAAACAGAAGCCACTGGAGCACCTCAAAAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCGAAGCCATCAATGGTTTCCA < 2:1647866/90‑1 AGAAACAGAAGCCACTGGAGCACCTCAAAAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCGAAGCCATCAATGGTTTCCA < 1:1563504/90‑1 AAACAGAAGCCACTGGAGCACCTCAAAAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCGAAGCCATCAATGGTTTCCATG > 2:262718/1‑90 AACAGAAGCCACTGGAGCACCTCAAAAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCGAAGCCATCAATGGTTTCCATGA > 2:1113537/1‑90 ACAGAAGCCACTGGAGCACCTCAAAAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACC > 2:1266588/1‑66 ACAGAAGCCACTGGAGCACCTCAAAAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACC < 1:1266588/66‑1 AGAAGCCACTGGAGCACCTCAAAAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCGAAGCCATCAATGGTTTCCATGACAC < 1:488750/90‑1 GAAGCCACTGGAGCACCTCAAAAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCGAAGCCATCAATGGTTTCCATGACACA > 1:197060/1‑90 GAAGCCACTGGAGCACCTCAAAAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCGAAGCCATCAATGGTTTCCATGACACA > 1:531265/1‑90 CTGGAGCACCTCAAAAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCGAAGCCATCAATGGTTTCCATGACACAGCCAACG > 2:603515/1‑90 GCACCTCAAAAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCGAAGCCATCAATGGTTTCCATGACACAGCCAACGCCGTG > 2:270600/1‑90 ACCTCAAAAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCGAAGCCATCAATGGTTTCCATGACACAGCCAACGCCGTGGC > 1:785838/1‑90 ACCTCAAAAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCGAAGCCATCAATGGTTTCCATGACACAGCCAACGCCGTGGC < 2:1611828/90‑1 ACCTCAAAAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCGAAGCCATCAATGGTTTCCATGACACAGCCAACGCCGTGGC < 2:831225/90‑1 ACCTCAAAAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCGAAGCCATCAATGGTTTCCATGACACAGCCAACGCCGTGGC > 2:14792/1‑90 ACCTCAAAAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCGAAGCCATCAATGGTTTCCATGACACAGCCAACGCCGTGGC > 2:741218/1‑90 ACCTCAAAAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCGAAGCCATCAATGGTTTCCATGACACAGCCAACGCCGTGGC > 1:1482139/1‑90 ACCTCAAAAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCGAAGCCATCAATGGTTTCCATGACACAGCCAACGCCGTGGC < 1:1614397/90‑1 CCTCAAAAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACTGAAGCCATCAATGGTTTCCATGACACAGCCAACGCCGTGGCg < 2:197060/90‑2 CCTCAAAAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCGAAGCCATCAATGGTTTCCATGACACAGCCAACGCCGTGGCA < 2:1435548/90‑1 CCTCAAAAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCGAAGCCATCAATGGTTTCCATGACACAGCCAACGCCGTGGCA < 2:1206403/90‑1 CCTCAAAAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCGAAGCCATCAATGGTTTCCATGACACAGCCAACGCCGTGGCA < 2:1399709/90‑1 TCAAAAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCGAAGCCATCAATGGTTTCCATGACACAGCCAACGCCGTGGCAAC < 1:1101333/90‑1 TCAAAAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCGAAGCCATCAATGGTTTCCATGACACAGCCAACGCCGTGGCAAC > 1:1617019/1‑90 AAAAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCGAAGCCATCAATGGTTTCCATGACACAGCCAACGCCGTGGCAACCG < 2:1055861/90‑1 AAAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCGAAGCCATCAATGGTTTCCATGACACAGCCAACGCCGTGGCAACCGT < 2:786303/90‑1 AAAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCGAAGCCATCAATGGTTTCCATGACACAGCCAACGCCGTGGCAACCGT < 2:22363/90‑1 AAAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCGAAGCCATCAATGGTTTCCATGACACAGCCAACGCCGTGGCAACCGT < 1:516349/90‑1 AAAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCGAAGCCATCAATGGTTTCCATGACACAGCCAACGCCGTGGCAACCGT < 1:1247657/90‑1 AAAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCGAAGCCATCAATGGTTTCCATGACACAGCCAACGCCGTGGCAACCGT < 1:741218/90‑1 AAAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCGAAGCCATCAATGGTTTCCATGACACAGCCAACGCCGTGGCAACCGT < 1:1265405/90‑1 AAAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCGAAGCCATCAATGGTTTCCATGACACAGCCAACGCCGTGGCAACCGT < 2:1551469/90‑1 AAAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCGAAGCCATCAATGGTTTCCATGACACAGCCAACGCCGTGGCAACCGT < 1:812043/90‑1 AAAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCGAAGCCATCAATGGTTTCCATGACACAGCCAACGCCGTGGCAACCGT < 2:1611361/90‑1 AACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCGAAGCCATCAATGGTTTCCATGACACAGCCAACGCCGTGGCAACCGTTA < 1:493450/90‑1 ACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCGAAGCCATCAATGGTTTCCATGACACAGCCAACGCCGTGGCAACCGTTATCT > 1:664971/1‑90 ACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCGAAGCCATCAATGGTTTCCATGACACAGCCAACGCCGTGGCAACCGTTATCT > 1:1457389/1‑90 ACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCGAAGCCATCAATGGTTTCCATGACACAGCCAACGCCGTGGCAACCGTTATCT > 2:1392802/1‑90 ACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCGAAGCCATCAATGGTTTCCATGACACAGCCAACGCCGTGGC > 1:1623492/1‑79 ACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCGAAGCCATCAATGGTTTCCATGACACAGCCAACGCCGTGGC < 2:1623492/79‑1 ATCATACACTAAATCAGTAAGTTGGCAGCATCACCGAAGCCATCAATGGTTTCCATGACACAGCCAACGCCGTGGCAACCGTTATCTATA > 1:1500348/1‑90 ATCATACACTAAATCAGTAAGTTGGCAGCATCACCGAAGCCATCAATGGTTTCCATGACACAGCCAACGCCGTGGCAACCGTTATCTATA > 1:705626/1‑90 TCATACACTAAATCAGTAAGTTGGCAGCATCACCGAAGCCATCAATGGTTTCCATGACACAGCCAACGCCGTGGCA > 2:1562756/1‑76 TCATACACTAAATCAGTAAGTTGGCAGCATCACCGAAGCCATCAATGGTTTCCATGACACAGCCAACGCCGTGGCA < 1:1562756/76‑1 CACTAAATCAGTAAGTTGGCAGCATCACCGAAGCCATCAATGGTTTCCATGACACAGCCAACGCCGTGGCAACCGTTATCTATACCCGCG > 2:1314476/1‑90 AAATGAGTAAGTTGGCAGCATCACCGAAGCCATCAATGGTTTCCATGACACAGCCAACGCCGTGGCAACCGTTATCTATACCCGCGCGAT > 1:678844/1‑90 AAATCAGTAAGTTGGCAGCATCACCGAAGCCATCAATGGTTTCCATGACACAGCCAACGCCGTGGCAACCGTTATCTATACCCGCGCGAT > 1:593727/1‑90 AAATCAGTAAGTTGGCAGCATCACCGAAGCCATCAATGGTTTCCATGACACAGCCAACGCCGTGGCAACCGTTATCTATACCCGCGCGAT > 1:70994/1‑90 AAATCAGTAAGTTGGCAGCATCACCGAAGCCATCAATGGTTTCCATGACACAGCCAACGCCGTGGCAACCGTTATCTATACCCGCGCGAT > 2:1508118/1‑90 AAATCAGTAAGTTGGCAGCATCACCGAAGCCATCAATGGTTTCCATGACACAGCCAACGCCGTGGCAACCGTTATCTATACCCGCGCGAT > 2:496210/1‑90 AAATCAGTAAGTTGGCAGCATCACCGAAGCCATCAATGGTTTCCATGACACAGCCAACGCCGTGGCAACCGT > 1:391880/1‑72 AAATCAGTAAGTTGGCAGCATCACCGAAGCCATCAATGGTTTCCATGACACAGCCAACGCCGTGGCAACCGT < 2:391880/72‑1 GTAAGTTGGCAGCATCACCGAAGCCATCAATGGTTTCCATGACACAGCCAACGCCGTGGCAACCGTTATCTATACCCGCGCGATGCGTTC > 1:204827/1‑90 GTAAGTTGGCAGCATCACCGAAGCCATCAATGGTTTCCATGACACAGCCAACGCCGTGGCAACCGTTATCTATACCCGCGCGATGCGTTC > 1:1163172/1‑90 GTAAGTTGGCAGCATCACCGAAGCCATCAATGGTTTCCATGACACAGCCAACGCCGTGGCAACCGTTATCTATACCCGCGCGATGCGTTC > 2:1294171/1‑90 GTAAGTTGGCAGCATCACCGAAGCCATCAATGGTTTCCATGACACAGCCAACGCCGTGGCAACCGT > 2:938650/1‑66 GTAAGTTGGCAGCATCACCGAAGCCATCAATGGTTTCCATGACACAGCCAACGCCGTGGCAACCGT < 1:938650/66‑1 AAGTTGGCAGCATCACCGAAGCCATCAATGGTTTCCATGACACAGCCAACGCCGTGGCAACCGTTATCTATACCCGCGCGATGCGTTCTC > 1:965716/1‑90 AAGTTGGCAGCATCACCGAAGCCATCAATGGTTTCCATGACACAGCCAACGCCGTGGCA > 2:1096510/1‑59 AAGTTGGCAGCATCACCGAAGCCATCAATGGTTTCCATGACACAGCCAACGCCGTGGCA < 1:1096510/59‑1 TGGCAGCATCACCGAAGCCATCAATGGTTTCCATGACACAGCCAACGCCGTGGCAACCGTTATCTATACCCGCGCGATGCGTTCTCAGCT > 2:804755/1‑90 TGGCAGCATCACCGAAGCCATCAATGGTTTCCATGACACAGCCAACGCCGTGGCAACCGTTATCTATACCCGCGCGATGCGTTCTCAGCT > 2:138439/1‑90 AGCATCACCGAAGCCATCAATGGTTTCCATGACACAGCCAACGCCGTGGCAACCGTTATCTATACCCGCGCGATGCGTTCTCAGCTCGCC > 1:1315149/1‑90 TCACCGAAGCCATCAATGGTTTCCATGACACAGCCAACGCCGTGGCAACCGT < 2:62639/52‑1 TCACCGAAGCCATCAATGGTTTCCATGACACAGCCAACGCCGTGGCAACCGT > 1:62639/1‑52 GAACAGGAGGGACAGCTGATAGAAACAGAAGCCACTGGAGCACCTCAAAAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACc‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NZ_CP009273/3576877‑3576789‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑CGAAGCCATCAATGGTTTCCATGACACAGCCAACGCCGTGGCAACCGTTATCTATACCCGCGCGATGCGTTCTCAGCTCGCC > NZ_CP009273/3631079‑3631160 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 30 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |