| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NZ_CP009273 | 3576789 = | NA (NA) | 82 (1.460) | 32/166 | 0.3 | 88.3% | coding (392/417 nt) | BW25113_RS17825 | YrhA family protein |
| ? | NZ_CP009273 | 3631079 = | 11 (0.190) | coding (78/1500 nt) | pitA | inorganic phosphate transporter PitA | |||||
Only 100 of 169 total aligned reads displayed.
GCGTAACGTCCTATGCTACATTTGTTTGCTGGCCTGGATTTGCATACCGGGCTGTTATTATTGCTTGCACTGGCTTTTGTGCTGTTCTACGAAGCCATCAATGGTTTCCATGACACAGCCAACGCCGTGGCAACCGTTATCTATACCCGCGCGATGCGTTCTCAGCTCGCCGTGGTTAT > NZ_CP009273/3630990‑3631168 | gaacaggagggacagctgatagaaacagaagccactggagcccctcaaaaacagcatcatacactaaatcagtaagttggcagcatcacc < 1:1490217‑M2/1‑1 (MQ=255)gaacaggagggacagctgatagaaacagaagccactggagcacctcaaaaacaccatcatacactaaatcagtaagttggcagcatcacc > 2:909711‑M2/90‑90 (MQ=255)gaacaggagggacagctgatagaaacagaagccactggagcacctcaaaaacaccatcatacactaaatcagtaagttggcagcatcacc < 2:257345‑M2/1‑1 (MQ=255)gaacaggagggacagctgatagaaacagaagccactggagcacctcaaaaacaccatcatacactaaatcagtaagttggcagcatcacc > 1:493055‑M2/90‑90 (MQ=255)gaacaggagggacagctgatagaaacagaagccactggagcacctcaaaaacaccatcatacactaaatcagtaagttggcagcatcacc < 2:1531411‑M2/1‑1 (MQ=255)gaacaggagggacagctgatagaaacagaagccactggagcacctcaaaaacaccatcatacactaaatcagtaagttggcagcatcacc > 1:1644374‑M2/90‑90 (MQ=255)gaacaggagggacagctgatagaaacagaagccactggagcacctcaaaaacaccatcatacactaaatcagtaagttggcagcatcacc > 2:1354689‑M2/90‑90 (MQ=255)gaacaggagggacagctgatagaaacagaagccactggagcacctcaaaaacaccatcatacactaaatcagtaagttggcagcatcacc > 2:1319006‑M2/90‑90 (MQ=255)gaacaggagggacagctgatagaaacagaagccactggagcacctcaaaaacaccatcatacactaaatcagtaagttggcagcatcacc > 2:1009456‑M2/90‑90 (MQ=255)gCGTAACGTCCTATGCTACATTTGTTTGCTGGCCTGGATTTGCATACCGGGCTGTTATTATTGCTTGCACTGGCTTTTGTGCTGTTCTAc > 1:264891/1‑90 (MQ=255) aacaggagggacagctgatagaaacagaagccactggagcacctcaaaaacaccatcatacactaaatcagtaagttggcagcatcacCg < 2:818063‑M2/2‑1 (MQ=255) acaggagggacagctgatagaaacagaagccactggagcacctcaaaaacaccatcatacactaaatcagtaagttggcagcatcacCGa > 2:846027‑M2/88‑90 (MQ=255) cggatggacagctgatagaaacagaagccactggagcacctgaaaaacaccatcatacactaaatcagtaagttggcagcatcacCGAAg < 1:910279‑M2/5‑1 (MQ=255) aggagggacagctgatagaaacagaagccactggagcacctcaaaaacaccatcatacactaaatcagtaagttggcagcatcacCGAAg > 2:459308‑M2/86‑90 (MQ=255) aggagggacagctgatagaaacagaagccactggagcacctcaaaaacaccatcatacactaaatcagtaagttggcagcatcacCGAAg < 1:161732‑M2/5‑1 (MQ=255) aggagggacagctgatagaaacagaagccactggagcacctcaaaaacaccatcatacactaaatcagtaagttggcagcatcacCGAAg < 2:327348‑M2/5‑1 (MQ=255) aggagggacagctgatagaaacagaagccactggagcacctcaaaaacaccatcatacactaaatcagtaagttggcagcatcacCGAAg > 1:327348‑M2/86‑90 (MQ=255) aaCGTCCTATGCTACATTTGTTTGCTGGCCTGGATTTGCATACCGGGCTGTTATTATTGCTTGCACTGGCTTTTGTGCTGTTCTACGAAg < 2:264891/90‑1 (MQ=255) ggagggacagctgatagaaacagaagccactggagcacctcaaaaacaccatcatacactaaatcagtaagttggcagcatcacc < 2:1530651‑M2/1‑1 (MQ=255) gacagctgatagaaacagaagccactggagcacctcaaaaacaccatcatacactaaatcagtaagttggcagcatcacCGAAGCCATCa > 2:1101333‑M2/80‑90 (MQ=255) gacagctgatagaaacagaagccactggagcacctcaaaaacaccatcatacactaaatcagtaagttggcagcatcacCGAAGCCATCa > 2:1614397‑M2/80‑90 (MQ=255) gacagctgatagaaacagaagccactggagcacctcaaaaacaccatcatacactaaatcagtaagttggcagcatcacCGAAGCCATCa > 2:761877‑M2/80‑90 (MQ=255) gctgatagaaacagaagccactggagcacctcaaaaacaccatcatacactaaatcagtaagttggcagcatcacCGAAGCCATCAATgg < 1:1460315‑M2/15‑1 (MQ=255) gCTACATTTGTTTGCTGGCCTGGATTTGCATACCGGGCTGTTATTATTGCTTGCACTGGCTTTTGTGCTGTTCTACGAAGCCATCggtaa > 2:1383624‑M2/1‑85 (MQ=255) gCTACATTTGTTTGCTGGCCTGGATTTGCATACCGGGCTGTTATTATTGCTTGCACTGGCTTTTGTGCTGTTCTACGAAGCCATCggtaa > 1:989646‑M2/1‑85 (MQ=255) tgatagaaacagaagccactggagcacctcaaaaacaccatcatacactaaatcagtaagttggcagcatcacCGAAGCCATCAATGGtt > 2:174324‑M2/74‑90 (MQ=255) tgatagaaacagaagccactggagcacctcaaaaacaccatcatacactaaatcagtaagttggcagcatcacCGAAGCCATCAATGGtt < 1:48471‑M2/17‑1 (MQ=255) tgatagaaacagaagccactggagcacctcaaaaacaccatcatacactaaatcagtaagttggcagcatcacCGAAGCCATCAATGGtt < 2:1260321‑M2/17‑1 (MQ=255) tACATTTGTTTGCTGGCCTGGATTTGCATACCGGGCTGTTATTATTGCTTGCACTGGCTTTTGTGCTGTTCTACGAAGCCATCggtaatg > 1:682736‑M2/1‑83 (MQ=255) tACATTTGTTTGCTGGCCTGGATTTGCATACCGGGCTGTTATTATTGCTTGCACTGGCTTTTGTGCTGTTCTACGAAGCCATCggtaatg < 1:731919‑M2/90‑8 (MQ=255) aCATTTGTTTGCTGGCCTGGATTTGCATACCGGGCTGTTATTATTGCTTGCACTGGCTTTTGTGCTGTTCTACGAAGCCAt < 2:1643730/81‑1 (MQ=255) aCATTTGTTTGCTGGCCTGGATTTGCATACCGGGCTGTTATTATTGCTTGCACTGGCTTTTGTGCTGTTCTACGAAGCCAt > 1:1643730/1‑81 (MQ=255) tttgtttgCTGGCCTGGATTTGCATACCGGGCTGTTATTATTGCTTGCACTGGCTTTTGTGCTGTTCTACGAAGCCATCggtaatgactc > 2:713213‑M2/1‑79 (MQ=255) tttgtttgCTGGCCTGGATTTGCATACCGGGCTGTTATTATTGCTTGCACTGGCTTTTGTGCTGTTCTACGAAGCCATCggtaatgactc < 1:1450616‑M2/90‑12 (MQ=255) agaaacagaagccactggagcacctcaaaaacaccatcatacactaaatcagtaagttggcagcatcacCGAAGCCATCAATGGTTTCCa < 2:1647866‑M2/21‑1 (MQ=255) agaaacagaagccactggagcacctcaaaaacaccatcatacactaaatcagtaagttggcagcatcacCGAAGCCATCAATGGTTTCCa < 1:1563504‑M2/21‑1 (MQ=255) tgtttgCTGGCCTGGATTTGCATACCGGGCTGTTATTATTGCTTGCACTGGCTTTTGTGCTGTTCTACGAAGCCATCggtaatgactcca > 2:1101077‑M2/1‑77 (MQ=255) tgtttgCTGGCCTGGATTTGCATACCGGGCTGTTATTATTGCTTGCACTGGCTTTTGTGCTGTTCTACGAAGCCATCggtaatgactcca < 2:1476352‑M2/90‑14 (MQ=255) tgtttgCTGGCCTGGATTTGCATACCGGGCTGTTATTATTGCTTGCACTGGCTTTTGTGCTGTTCTACGAAGCCATCggtaatgactcca > 1:607217‑M2/1‑77 (MQ=255) acagaagccactggagcacctcaaaaacaccatcatacactaaatcagtaagttggcagcatcacc < 1:1266588‑M2/1‑1 (MQ=255) ttgCTGGCCTGGATTTGCATACCGGGCTGTTATTATTGCTTGCACTGGCTTTTGTGCTGTTCTACGAAGCCATCggtaatgactccaact < 2:412342‑M2/90‑17 (MQ=255) gaagccactggagcacctcaaaaacaccatcatacactaaatcagtaagttggcagcatcacCGAAGCCATCAATGGTTTCCATGAcaca > 1:531265‑M2/63‑90 (MQ=255) tGGATTTGCATACCGGGCTGTTATTATTGCTTGCACTGGCTTTTGTGCTGTTCTACGAAGCCATCggtaatgactccaacttattgatag > 1:396836‑M2/1‑65 (MQ=255) tGGATTTGCATACCGGGCTGTTATTATTGCTTGCACTGGCTTTTGTGCTGTTCTACGAAGCCATCggtaatgactccaacttattgatag > 2:604816‑M2/1‑65 (MQ=255) gATTTGCATACCGGGCTGTTATTATTGCTTGCACTGGCTTTTGTGCTGTTCTACGAAGCCATCggtaatgactccaacttattgatagtg > 2:1483080‑M2/1‑63 (MQ=255) gcacctcaaaaacaccatcatacactaaatcagtaagttggcagcatcacCGAAGCCATCAATGGTTTCCATGACACAGCCAACGCCGTg > 2:270600‑M2/51‑90 (MQ=255) tGCATACCGGGCTGTTATTATTGCTTGCACTGGCTTTTGTGCTGTTCTACGAAGCCATCggtaatgactccaacttattgatagtgtttt < 2:1261858‑M2/90‑32 (MQ=255) gCATACCGGGCTGTTATTATTGCTTGCACTGGCTTTTGTGCTGTTCTACGAAGCCATCggtaatgactccaacttattgatagtgtttta < 2:602383‑M2/90‑33 (MQ=255) acctcaaaaacaccatcatacactaaatcagtaagttggcagcatcacCGAAGCCATCAATGGTTTCCATGACACAGCCAACGCCGTGGc < 2:96881‑M2/42‑1 (MQ=255) acctcaaaaacaccatcatacactaaatcagtaagttggcagcatcacCGAAGCCATCAATGGTTTCCATGACACAGCCAACGCCGTGGc < 1:1614397‑M2/42‑1 (MQ=255) acctcaaaaacaccatcatacactaaatcagtaagttggcagcatcacCGAAGCCATCAATGGTTTCCATGACACAGCCAACGCCGTGGc > 1:1482139‑M2/49‑90 (MQ=255) acctcaaaaacaccatcatacactaaatcagtaagttggcagcatcacCGAAGCCATCAATGGTTTCCATGACACAGCCAACGCCGTGGc > 1:785838‑M2/49‑90 (MQ=255) cctcaaaaacaccatcatacactaaatcagtaagttggcagcatcacTGAAGCCATCAATGGTTTCCATGACACAGCCAACGCCGTGgcg < 2:197060‑M2/43‑2 (MQ=255) cctcaaaaacaccatcatacactaaatcagtaagttggcagcatcacCGAAGCCATCAATGGTTTCCATGACACAGCCAACGCCGTGGCa < 2:1206403‑M2/43‑1 (MQ=255) cctcaaaaacaccatcatacactaaatcagtaagttggcagcatcacCGAAGCCATCAATGGTTTCCATGACACAGCCAACGCCGTGGCa < 2:1435548‑M2/43‑1 (MQ=255) cctcaaaaacaccatcatacactaaatcagtaagttggcagcatcacCGAAGCCATCAATGGTTTCCATGACACAGCCAACGCCGTGGCa < 2:1399709‑M2/43‑1 (MQ=255) ccGGGCTGTTATTATTGCTTGCACTGGCTTTTGTGCTGTTCTACGAAGCCATCggtaatgactccaacttattgatagtgttttatgttc < 2:59290‑M2/90‑38 (MQ=255) ccGGGCTGTTATTATTGCTTGCACTGGCTTTTGTGCTGTTCTACGAAGCCATCggtaatgactccaacttattgatagtgttttatgttc > 2:548847‑M2/1‑53 (MQ=255) ccGGGCTGTTATTATTGCTTGCACTGGCTTTTGTGCTGTTCTACGAAGCCATCggtaatgactccaacttattgatagtgttttatgttc > 2:1569863‑M2/1‑53 (MQ=255) ccGGGCTGTTATTATTGCTTGCACTGGCTTTTGTGCTGTTCTACGAAGCCATCggtaatgactccaacttattgatagtgttttatgttc < 1:744954‑M2/90‑38 (MQ=255) aaaaacaccatcatacactaaatcagtaagttggcagcatcacCGAAGCCATCAATGGTTTCCATGACACAGCCAACGCCGTGGCAACCg < 2:1055861‑M2/47‑1 (MQ=255) aaaacaccatcatacactaaatcagtaagttggcagcatcacCGAAGCCATCAATGGTTTCCATGACACAGCCAACGCCGTGGCAACCGt < 1:1265405‑M2/48‑1 (MQ=255) aaaacaccatcatacactaaatcagtaagttggcagcatcacCGAAGCCATCAATGGTTTCCATGACACAGCCAACGCCGTGGCAACCGt < 1:741218‑M2/48‑1 (MQ=255) aaaacaccatcatacactaaatcagtaagttggcagcatcacCGAAGCCATCAATGGTTTCCATGACACAGCCAACGCCGTGGCAACCGt < 2:786303‑M2/48‑1 (MQ=255) aaaacaccatcatacactaaatcagtaagttggcagcatcacCGAAGCCATCAATGGTTTCCATGACACAGCCAACGCCGTGGCAACCGt < 2:1611361‑M2/48‑1 (MQ=255) aaaacaccatcatacactaaatcagtaagttggcagcatcacCGAAGCCATCAATGGTTTCCATGACACAGCCAACGCCGTGGCAACCGt < 2:1551469‑M2/48‑1 (MQ=255) gggCTGTTATTATTGCTTGCACTGGCTTTTGTGCTGTTCTACGAAGCCATCAATGGTTTCCATGACACAGCCAACGCCGTGGCAACCGtt > 2:1385407/1‑90 (MQ=255) aacaccatcatacactaaatcagtaagttggcagcatcacCGAAGCCATCAATGGTTTCCATGACACAGCCAACGCCGTGGCAACCGTTa < 1:493450‑M2/50‑1 (MQ=255) accatcatacactaaatcagtaagttggcagcatcacCGAAGCCATCAATGGTTTCCATGACACAGCCAACGCCGTGGCAACCGTTATCt > 1:664971‑M2/38‑90 (MQ=255) gTTATTATTGCTTGCACTGGCTTTTGTGCTGTTCTACGAAGCCATCggtaatgactccaacttattgatag > 1:564332‑M2/1‑46 (MQ=255) atcatacactaaatcagtaagttggcagcatcacCGAAGCCATCAATGGTTTCCATGACACAGCCAACGCCGTGGCAACCGTTATCtata > 1:705626‑M2/35‑90 (MQ=255) atcatacactaaatcagtaagttggcagcatcacCGAAGCCATCAATGGTTTCCATGACACAGCCAACGCCGTGGCAACCGTTATCtata > 1:1500348‑M2/35‑90 (MQ=255) tcatacactaaatcagtaagttggcagcatcacCGAAGCCATCAATGGTTTCCATGACACAGCCAACGCCGTGGCa > 2:1562756‑M2/34‑76 (MQ=255) tcatacactaaatcagtaagttggcagcatcacCGAAGCCATCAATGGTTTCCATGACACAGCCAACGCCGTGGCa < 1:1562756‑M2/43‑1 (MQ=255) ttgcttgcACTGGCTTTTGTGCTGTTCTACGAAGCCATCggtaatgactccaacttattgatagtgttttatgttcagataatgcccgat > 1:704492‑M2/1‑39 (MQ=255) ttgcttgcACTGGCTTTTGTGCTGTTCTACGAAGCCATCggtaatgactccaacttattgatagtgttttatgttcagataatgcccgat > 2:1099319‑M2/1‑39 (MQ=255) tgcttgcACTGGCTTTTGTGCTGTTCTACGAAGCCATCAATGGTTTCCATGACACAGCCAACGCCGTGGCAACCGt < 1:967972/76‑1 (MQ=255) gcttgcACTGGCTTTTGTGCTGTTCTACGAAGCCATCg < 2:1495797‑M2/38‑2 (MQ=255) cttgcACTGGCTTTTGTGCTGTTCTACGAAGCCATCggtaatgactccaacttattgatagtgttttatgttcagataatgcccgatgac < 1:388615‑M2/90‑55 (MQ=255) cttgcACTGGCTTTTGTGCTGTTCTACGAAGCCATCggtaa > 1:668735‑M2/1‑36 (MQ=255) cttgcACTGGCTTTTGTGCTGTTCTACGAAGCCATCggtaa < 2:668735‑M2/41‑6 (MQ=255) ctaaatcagtaagttggcagcatcacCGAAGCCATCAATGGTTTCCATGACACAGCCAACGCCGTGGCAACCGTTATCTATACCcgcgcg < 1:603515‑M2/64‑1 (MQ=255) ttgcACTGGCTTTTGTGCTGTTCTACGAAGCCATCggtaatgactccaacttattgatagtgttttatgttcagataatgcccgatgact < 1:625083‑M2/90‑56 (MQ=255) aaatcagtaagttggcagcatcacCGAAGCCATCAATGGTTTCCATGACACAGCCAACGCCGTGGCAACCGTTATCTATACCCGCGCGAt > 2:496210‑M2/25‑90 (MQ=255) aaatcagtaagttggcagcatcacCGAAGCCATCAATGGTTTCCATGACACAGCCAACGCCGTGGCAACCGTTATCTATACCCGCGCGAt > 2:1508118‑M2/25‑90 (MQ=255) aCTGGCTTTTGTGCTGTTCTACGAAGCCATCggtaatgactccaacttattgatagtgttttatgttcagataatgcccgatgactttgt > 1:901228‑M2/1‑31 (MQ=255) gtaagttggcagcatcacCGAAGCCATCAATGGTTTCCATGACACAGCCAACGCCGTGGCAACCGt > 2:938650‑M2/19‑66 (MQ=255) gtaagttggcagcatcacCGAAGCCATCAATGGTTTCCATGACACAGCCAACGCCGTGGCAACCGt < 1:938650‑M2/48‑1 (MQ=255) gtaagttggcagcatcacCGAAGCCATCAATGGTTTCCATGACACAGCCAACGCCGTGGCAACCGTTATCTATACCCGCGCGATGCGTtc > 1:204827‑M2/19‑90 (MQ=255) gtaagttggcagcatcacCGAAGCCATCAATGGTTTCCATGACACAGCCAACGCCGTGGCAACCGTTATCTATACCCGCGCGATGCGTtc > 2:1294171‑M2/19‑90 (MQ=255) gtaagttggcagcatcacCGAAGCCATCAATGGTTTCCATGACACAGCCAACGCCGTGGCAACCGTTATCTATACCCGCGCGATGCGTtc > 1:1163172‑M2/19‑90 (MQ=255) ggCTTTTGTGCTGTTCTACGAAGCCATCggtaatgactccaacttattgatagtgttttatgttcagataatgcccgatgactttgtcat < 2:213059‑M2/90‑63 (MQ=255) cTTTTGTGCTGTTCTACGAAGCCATCggtaatgactccaacttattgatagtgttttatgttcagataatgcccgatgactttgtcatgc > 1:1338500‑M2/1‑26 (MQ=255) aagttggcagcatcacCGAAGCCATCAATGGTTTCCATGACACAGCCAACGCCGTGGCa < 1:1096510‑M2/43‑1 (MQ=255) ttGTGCTGTTCTACGAAGCCATCAATGGTTTCCATGACACAGCCAACGCCGTGGCAACCGTTATCTATACCCGCGCGATGCGTTCTCAGc < 1:1053657/90‑1 (MQ=255) cTGTTCTACGAAGCCATCggtaatgactccaacttattgatagtgttttatgttcagataatgcccgatgactttgtcatgcagctccac > 1:412342‑M2/1‑18 (MQ=255) gTTCTACGAAGCCATCggtaatgactccaacttattgatagtgttttatgttcagataatgcccgatgactttgtcatgcagctccaccg < 1:1427657‑M2/90‑75 (MQ=255) tcacCGAAGCCATCAATGGTTTCCATGACACAGCCAACGCCGTGGCAACCGt < 2:62639‑M2/48‑1 (MQ=255) aCGAAGCCATCggtaatgactccaacttattgatagtgttttatgttcagataatgcccgatgactttgtcatgcagctccaccgatttt < 2:1150937‑M2/90‑80 (MQ=255) cGAAGCCATCggtaatgactccaacttattgatagtgttttatgttcagataatgcccgatgactttgtcatgcagctccaccgattttg > 2:1142288‑M2/1‑10 (MQ=255) | GCGTAACGTCCTATGCTACATTTGTTTGCTGGCCTGGATTTGCATACCGGGCTGTTATTATTGCTTGCACTGGCTTTTGTGCTGTTCTACGAAGCCATCAATGGTTTCCATGACACAGCCAACGCCGTGGCAACCGTTATCTATACCCGCGCGATGCGTTCTCAGCTCGCCGTGGTTAT > NZ_CP009273/3630990‑3631168 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 30 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |