Missing coverage evidence...
			seq id	start	end	size	←reads	reads→	gene	description
*	*	÷	NZ_CP009273	2297159	2297197	39	2 [1]	[1] 5	BW25113_RS25870	hypothetical protein

GATGTGTCAAAGATGCATACCCCGATCGGGGTAAAACCTGTAGCAGGATCAAAAGAGTGGCGGGAAGC‑GTGGCAAAAACGGGCTTTTGCTCACATTTCAAAT  >  NZ_CP009273/2297073‑2297174                                                                                       |                 gATGTGTCAAAGATGCATACCCCGATCGGGGTAAAACCTGTAGCAGGATCAAAAGAGTGGCGGGTAGCAGGGGCAAAAACGGGGtttggt               >  1:324309/1‑87 (MQ=255)             aTGCATACCCCGATCGGGGTAAAACCTGTAGCAGGATCAAAAGAGTGGCGGGAAGC‑GTGGCAAAAACGGGCTTTTGCTCACATTTCAAAt  <  1:111010/90‑1 (MQ=255)                                                                                       |                 GATGTGTCAAAGATGCATACCCCGATCGGGGTAAAACCTGTAGCAGGATCAAAAGAGTGGCGGGAAGC‑GTGGCAAAAACGGGCTTTTGCTCACATTTCAAAT  >  NZ_CP009273/2297073‑2297174

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 5 ≤ ATCG/ATCG < 8 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑