New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? NZ_CP009273 = 295506499 (0.950)3 (0.030) 3/160 4.7 3.0% coding (724/3369 nt) recC exodeoxyribonuclease V subunit gamma
?NZ_CP009273 = 2955068 97 (0.970)coding (720/3369 nt) recC exodeoxyribonuclease V subunit gamma
Rejected: Coverage evenness skew score above cutoff.
Rejected: Frequency below/above cutoff threshold.

Only 100 of 105 total aligned reads displayed.

ATCTTCAAAACTGTGTCGACGCTGACGGGTCAGCAGTTTCGCCAGATAAGCAGGATCTTTAATATCGCCCCAGTAATAACGGCAGGGGTTGGTAAACAGGAGATGGATTTCAATATGTTTACCCAGCGCCTGTAGCGCCTGGAGATAAACAGGCGGTAACGCGGAAATACCGCATATAA  >  NZ_CP009273/2954975‑2955153
                                                                                         |                                                                                         
aTCTTCAAAACTGTGTCGACGCTGACGGGTCAGCAGTTTCGCCAGATAAGCAGGATCTTTAATATCGCCCCAGTAATAACGGCAGGGGtt                                                                                           <  1:325001/90‑1 (MQ=255)
  cTTCAAAACTGTGTCGACGCTGACGGGTCAGCAGTTTCGCCAGATAAGCAGGATCTTTAATATCGCCCCAGTAATAACGGCAGGGGtttg                                                                                         >  1:2270157/1‑88 (MQ=255)
  cTTCAAAACTGTGTCGACGCTGACGGGTCAGCAGTTTCGCCAGATAAGCAGGATCTTTAATATCGCCCCAGTAATAACGGCAGGGGTTgg                                                                                         <  1:832976/90‑1 (MQ=255)
    tCAAAACTGTGTCGACGCTGACGGGTCAGCAGTTTCGCCAGATAAGCAGGATCTTTAATATCGCCCCAGTAATAACGGCAGGGGTTGGTa                                                                                       <  2:2206738/90‑1 (MQ=255)
     cAAAACTGTGTCGACGCTGACGGGTCAGCAGTTTCGCCAGATAAGCAGGATCTTTAATATCGCCCCAGTAATAACGGCAGGGGTTGGTaa                                                                                      <  1:2344214/90‑1 (MQ=255)
       aaaCTGTGTCGACGCTGACGGGTCAGCAGTTTCGCCAGATAAGCAGGATCTTTAATATCGCCCCAGTAATAACGGCAGGGGTTGGTAAAc                                                                                    <  1:1785860/90‑1 (MQ=255)
       aaaCTGTGTCGACGCTGACGGGTCAGCAGTTTCGCCAGATAAGCAGGATCTTTAATATCGCCCCAGTAATAACGGCAGGGGTTGGTAAAc                                                                                    <  1:743773/90‑1 (MQ=255)
       aaaCTGTGTCGACGCTGACGGGTCAGCAGTTTCGCCAGATAAGCAGGATCTTTAATATCGCCCCAGTAATAACGGCAGGGGTTGGTAAAc                                                                                    <  1:907854/90‑1 (MQ=255)
       aaaCTGTGTCGACGCTGACGGGTCAGCAGTTTCGCCAGATAAGCAGGATCTTTAATATCGCCCCAGTAATAACGGCAGGGGTTGGTAAAc                                                                                    <  1:2419011/90‑1 (MQ=255)
          cTGTGTCGACGCTGACGGGTCAGCAGTTTCGCCAGATAAGCAGGATCTTTAATATCGCCCCAGTAATAACGGCAGGGGGTGGGAAACAgg                                                                                 >  1:2151217/1‑90 (MQ=255)
            gtgtCGACGCTGACGGGTCAGCAGTTTCGCCAGATAAGCAGGATCTTTAATATCGCCCCAGTAATAACGGCAGGGGtt                                                                                           <  1:2859844/78‑1 (MQ=255)
            gtgtCGACGCTGACGGGTCAGCAGTTTCGCCAGATAAGCAGGATCTTTAATATCGCCCCAGTAATAACGGCAGGGGtt                                                                                           >  2:2859844/1‑78 (MQ=255)
            gtgtCGACGCTGACGGGTCAGCAGTTTCGCCAGATAAGCAGGATCTTTAATATCGCCCCAGTAATAACGGCAGGGGTTGGTAAACAGgag                                                                               >  2:1995099/1‑90 (MQ=255)
            gtgtCGACGCTGACGGGTCAGCAGTTTCGCCAGATAAGCAGGATCTTTAATATCGCCCCAGTAATAACGGCAGGGGTTGGTAAACAGgag                                                                               >  1:1651132/1‑90 (MQ=255)
            gtgtCGACGCTGACGGGTCAGCAGTTTCGCCAGATAAGCAGGATCTTTAATATCGCCCCAGTAATAACGGCAGGGGTTGGTAAACAGgag                                                                               >  2:1913268/1‑90 (MQ=255)
            gtgtCGACGCTGACGGGTCAGCAGTTTCGCCAGATAAGCAGGATCTTTAATATCGCCCCAGTAATAACGGCAGGGGTTGGTAAACAGgag                                                                               >  2:2157861/1‑90 (MQ=255)
            gtgtCGACGCTGACGGGTCAGCAGTTTCGCCAGATAAGCAGGATCTTTAATATCGCCCCAGTAATAACGGCAGGGGTTGGTAAACAGgag                                                                               >  2:2401752/1‑90 (MQ=255)
            gtgtCGACGCTGACGGGTCAGCAGTTTCGCCAGATAAGCAGGATCTTTAATATCGCCCCAGTAATAACGGCAGGGGTTGGTAAACAGgag                                                                               >  2:1379126/1‑90 (MQ=255)
            gtgtCGACGCTGACGGGTCAGCAGTTTCGCCAGATAAGCAGGATCTTTAATATCGCCCCAGTAATAACGGCAGGGGTTGGGAAAAAGgag                                                                               >  2:2979643/1‑90 (MQ=255)
            gtgtCGACGCTGACGGGTCAGCAGTTTCGCCAGATAAGCAGGATCTTTAATATCGCCCCAGTAATAACGGCAGGGGGTGGTAAACAGgag                                                                               >  1:847992/1‑90 (MQ=255)
            gtgtCGACGCTGACGGGGCAGCAGGTTCGCCAGATAAGCAGGATCTTTAATATCGCCCCAGTAATAACGGCAGGGGTTTGTAAACATgag                                                                               >  2:1622865/1‑90 (MQ=255)
            gtgtCGACGCAGACGGGTCAGCAGTTTCGCCAGATAAGCAGGATCTTTAATATCGCCCCAGTAATAACGGCAGGGGTTGGTAAACAgggg                                                                               >  2:116699/1‑88 (MQ=255)
             tgtCGACGCTGACGGGTCAGCAGTTTCGCCAGATAAGCAGGATCTTTAATATCGCCCCAGTAATAACGGCAGGGGTTGGTAAACAGgaga                                                                              <  1:2817837/90‑1 (MQ=255)
              gtCGACGCTGACGGGTCAGCAGTTTCGCCAGATAAGCAGGATCTTTAATATCGCCCCAGTAATAACGGCAGGGGTTGGTAAACAGGAGAt                                                                             <  1:1995099/90‑1 (MQ=255)
              gtCGACGCTGACGGGTCAGCAGTTTCGCCAGATAAGCAGGATCTTTAATATCGCCCCAGTAATAACGGCAGGGGTTGGTAAACAGGAGAt                                                                             <  1:2514460/90‑1 (MQ=255)
              gtCGACGCTGACGGGTCAGCAGTTTCGCCAGATAAGCAGGATCTTTAATATCGCCCCAGTAATAACGGCAGGGGTTGGTAAACAGGAGAt                                                                             <  1:1610501/90‑1 (MQ=255)
              gtCGACGCTGACGGGTCAGCAGTTTCGCCAGATAAGCAGGATCTTTAATATCGCCCCAGTAATAACGGCAGGGGTTGGTAAACAGGAGAt                                                                             <  2:1105759/90‑1 (MQ=255)
              gtCGACGCTGACGGGTCAGCAGTTTCGCCAGATAAGCAGGATCTTTAATATCGCCCCAGTAATAACGGCAGGGGTTGGTAAACAGGAGAt                                                                             <  1:2401752/90‑1 (MQ=255)
              gtCGACGCTGACGGGTCAGCAGTTTCGCCAGATAAGCAGGATCTTTAATATCGCCCCAGTAATAACGGCAGGGGTTGGTAAACAGGAGAt                                                                             <  1:1913268/90‑1 (MQ=255)
              gtCGACGCTGACGGGTCAGCAGTTTCGCCAGATAAGCAGGATCTTTAATATCGCCCCAGTAATAACGGCAGGGGTTGGGAAAAAGGAGAt                                                                             >  1:2607662/1‑90 (MQ=255)
               tCGACGCTGACGGGTCAGCAGTTTCGCCAGATAAGCAGGATCTTTAATATCGCCCCAGTAATAACGGCAGGGGTTGGTAAACAGGAGATg                                                                            <  2:1541231/90‑1 (MQ=255)
                 gACGCTGACGGGTCAGCAGTTTCGCCAGATAAGCAGGATCTTTAATATCGCCCCAGTAATAACGGCAGGGGTTGGTAAACAGGAGATGGa                                                                          >  2:1134736/1‑90 (MQ=255)
                 gACGCTGACGGGTCAGCAGTTTCGCCAGATAAGCAGGATCTTTAATATCGCCCCAGTAATAACGGCAGGGGGTGGTAAAAAGGAGATggg                                                                          >  1:1534131/1‑89 (MQ=255)
                  aCGCTGACGGGTCAGCAGTTTCGCCAGATAAGCAGGATCTTTAATATCGCCCCAGTAATAACGGCAGGGGTTGGTAAACAGGAGATGGAt                                                                         <  1:257056/90‑1 (MQ=255)
                   cGCTGACGGGTCAGCAGTTTCGCCAGATAAGCAGGATCTTTAATATCGCCCCAGTAATAACGGCAGGGGTTGGTAAACAGGAGATGGAtt                                                                        >  1:2897925/1‑90 (MQ=255)
                      tGACGGGTCAGCAGTTTCGCCAGATAAGCAGGATCTTTAATATCGCCCCAGTAATAACGGCAGGGGTTGGTAAACAGGAGATGGATTTCa                                                                     >  1:2590054/1‑90 (MQ=255)
                      tGACGGGTCAGCAGTTTCGCCAGATAAGCAGGATCTTTAATATCGCCCCAGTAATAACGGCAGGGGGTGGGAAAAAGGAGATGGAtttta                                                                     >  1:1252688/1‑88 (MQ=255)
                        aCGGGTCAGCAGTTTCGCCAGATAAGCAGGATCTTTAATATCGCCCCAGTAATAACGGCAGGGGTTGGTAAACAGGAGATGGATTTCAat                                                                   <  2:2152332/90‑1 (MQ=255)
                        aCGGGTCAGCAGTTTCGCCAGATAAGCAGGATCTTTAATATCGCCCCAGTAATAACGGCAGGGGTTGGTAAACAGGAGATGGATTTCAat                                                                   <  2:1736704/90‑1 (MQ=255)
                        aCGGGTCAGCAGTTTCGCCAGATAAGCAGGATCTTTAATATCGCCCCAGTAATAACGGCAGGGGTTGGTAAACAGGAGATGGATTTCAat                                                                   <  2:1167933/90‑1 (MQ=255)
                        aCGGGTCAGCAGTTTCGCCAGATAAGCAGGATCTTTAATATCGCCCCAGTAATAACGGCAGGGGTTGGTAAACAGGAGATGGATTTCAat                                                                   <  2:2604589/90‑1 (MQ=255)
                        aCGGGTCAGCAGTTTCGCCAGATAAGCAGGATCTTTAATATCGCCCCAGTAATAACGGCAGGGGTTGGTAAACAGGAGATGGATTTCAat                                                                   <  1:1134736/90‑1 (MQ=255)
                        aCGGGTCAGCAGTTTCGCCAGATAAGCAGGATCTTTAATATCGCCCCAGTAATAACGGCAGGGGTTGGTAAACAGGAGATGGATTTCAat                                                                   <  1:1706449/90‑1 (MQ=255)
                        aCGGGTCAGCAGTTTCGCCAGATAAGCAGGATCTTTAATATCGCCCCAGTAATAACGGCAGGGGTTGGTAAACAGGAGATGGATTTCAat                                                                   <  1:1578315/90‑1 (MQ=255)
                        aCGGGTCAGCAGTTTCGCCAGATAAGCAGGATCTTTAATATCGCCCCAGTAATAACGGCAGGGGTTGGTAAACAGGAGATGGATTTCAat                                                                   <  1:1379126/90‑1 (MQ=255)
                        aCGGGTCAGCAGTTTCGCCAGATAAGCAGGATCTTTAATAACGCCCCAGTAATAACGGCAGGGGTTGGTAAACAGGAGATGGATTTCAat                                                                   <  1:1246673/90‑1 (MQ=255)
                               agcagTTTCGCCAGATAAGCAGGATCTTTAATATCGCCCCAGTAATAACGGCAGGGGTTGGTAAACAGGAGATGGATTTCAATATGTTTa                                                            >  2:125569/1‑90 (MQ=255)
                                   gTTTCGCCAGATAAGCAGGATCTTTAATATCGCCCCAGTAATAACGGCAGGGGTTGGTAAACAGGAGATGGATTTCAATATGTTTACCCa                                                        <  2:1572893/90‑1 (MQ=255)
                                   gTTTCGCCAGATAAGCAGGATCTTTAATATCGCCCCAGTAATAACGGCAGGGGTTGGTAAACAGGAGATGGATTTCAATATGTTTACCCa                                                        <  1:2371864/90‑1 (MQ=255)
                                     ttCGCCAGATAAGCAGGATCTTTAATATCGCCCCAGTAATAACGGCAGGGGtt                                                                                           <  1:1647642/53‑1 (MQ=255)
                                     ttCGCCAGATAAGCAGGATCTTTAATATCGCCCCAGTAATAACGGCAGGGGtt                                                                                           >  2:1647642/1‑53 (MQ=255)
                                     ttCGCCAGATAAGCAGGATCTTTAATATCGCCCCAGTAATAACGGCAGGGGGTGGTAAACAGGAGATGGATTTCAATATGTTTACCCAgc                                                      >  1:992718/1‑90 (MQ=255)
                                                  cAGGATCTTTAATATCGCCCCAGTAATAACGGCAGGGGTTGGTAAACAGGAGATGGATTTCAATATGTTTACCCAGCGCCTGTAGCGCCt                                         <  2:1651132/90‑1 (MQ=255)
                                                  cAGGATCTTTAATATCGCCCCAGTAATAACGGCAGGGGTTGGTAAACAGGAGATGGATTTCAATATGTTTACCCAGCGCCTGTAGCGCCt                                         <  2:2590054/90‑1 (MQ=255)
                                                      aTCTTTAATATCGCCCCAGTAATAACGGCAGGGGTTGGTAAACAGGAGATGGATTTCAATATGTTTACCCAGCGCCTGTAGCGCCTGgag                                     <  2:1588280/90‑1 (MQ=255)
                                                              tatCGCCCCAGTAATAACGGCAGGGGTTGGTAAACAGGAGATGGATTTCAAAATGTTTACCCAGCGCCTGTAGCGCCTGGAGATAAACAg                             >  1:953521/1‑90 (MQ=255)
                                                                tCGCCCCAGTAATAACGGCAGGGGTTGGTAAACAGGAGATGGATTTCAATATGTTTACCCAGCGCCTGTAGCGCCTGGAGATAAACAGGc                           >  2:753010/1‑90 (MQ=255)
                                                                tCGCCCCAGTAATAACGGCAGGGGTTGGTAAACAGGAGATGGATTTCAATATGTTTACCCAGCGCCTGTAGCGCCTGGAGATAAACAGGc                           >  2:2899039/1‑90 (MQ=255)
                                                                tCGCCCCAGTAATAACGGCAGGGGTTGGTAAACAGGAGATGGATTTCAATATGTTTACCCAGCGCCTGTAGCGCCTGGAGATAAACAGGc                           >  2:563040/1‑90 (MQ=255)
                                                                tCGCCCCAGTAATAACGGCAGGGGTTGGTAAACAGGAGATGGATTTCAATATGTTTACCCAGCGCCTGTAGCGCCTGGAGATAAACAGGc                           >  2:1555619/1‑90 (MQ=255)
                                                                 cGCCCCAGTAATAACGGCAGGGGTTGGTAAACAGGAGATGGATTTCAATATGTTTACCCAGCGCCTGTAGCGCCTGGAGATAAACAGGCg                          >  2:616396/1‑90 (MQ=255)
                                                                  gCCCCAGTAATAACGGCAGGGGTTGGTAAACAGGAGATGGATTTCAat                                                                   >  2:1601707/1‑48 (MQ=255)
                                                                  gCCCCAGTAATAACGGCAGGGGTTGGTAAACAGGAGATGGATTTCAat                                                                   >  2:2719548/1‑48 (MQ=255)
                                                                  gCCCCAGTAATAACGGCAGGGGTTGGTAAACAGGAGATGGATTTCAat                                                                   <  1:1601707/48‑1 (MQ=255)
                                                                  gCCCCAGTAATAACGGCAGGGGTTGGTAAACAGGAGATGGATTTCAat                                                                   <  1:2719548/48‑1 (MQ=255)
                                                                  gCCCCAGTAATAACGGCAGGGGTTGGTAAACAGGAGATGGATTTCAATATGTTTACCCa                                                        <  2:678882/59‑1 (MQ=255)
                                                                  gCCCCAGTAATAACGGCAGGGGTTGGTAAACAGGAGATGGATTTCAATATGTTTACCCa                                                        >  1:678882/1‑59 (MQ=255)
                                                                  gCCCCAGTAATAACGGCAGGGGTTGGTAAACAGGAGATGGATTTCAATATGTTTACCCAGCGCCTGTAGCGCCTGga                                      <  2:861969/77‑1 (MQ=255)
                                                                  gCCCCAGTAATAACGGCAGGGGTTGGTAAACAGGAGATGGATTTCAATATGTTTACCCAGCGCCTGTAGCGCCTGga                                      >  1:861969/1‑77 (MQ=255)
                                                                  gCCCCAGTAATAACGGCAGGGGTTGGTAAACAGGAGATGGATTTCAATATGTTTACCCAGCGCCTGTAGCGCCTGGAGATAAACAGGCgg                         >  2:1165302/1‑90 (MQ=255)
                                                                  gCCCCAGTAATAACGGCAGGGGTTGGTAAACAGGAGATGGATTTCAATATGTTTACCCAGCGCCTGTAGCGCCTGGAGATAAACAGGCgg                         >  1:1725200/1‑90 (MQ=255)
                                                                  gCCCCAGTAATAACGGCAGGGGTTGGTAAACAGGAGATGGATTTCAATATGTTTACCCAGCGCCTGTAGCGCCTGGAGATAAACAGGCgg                         >  2:881113/1‑90 (MQ=255)
                                                                  gCCCCAGTAATAACGGCAGGGGTTGGTAAACAGGAGATGGATTTCAATATGTTTACCCAGCGCCTGTAGCGCCTGGAGATAAAAAGGCgg                         >  1:223488/1‑90 (MQ=255)
                                                                  gCCCCAGTAATAACGGCAGGGGTTGGTAAACAGGAGATGGATTTCAATATGTTTACCCAGCGCCTGTAGCGCCTGGAGATAAAAAGGCgg                         >  1:10190/1‑90 (MQ=255)
                                                                  gCCCCAGTAATAACGGCAGGGGTTGGTAAACAGGAGATGGATTTCAATATGTTTACCCAGCGCCCGTAGCGCCTGGAGATAAACAGGCgg                         >  1:2149955/1‑90 (MQ=255)
                                                                  gCCCCAGTAATAACGGCAGGGGTTGGTAAACAGGAGATGGATTTCAATATGTTTACCCAACGCCTGTAGCGCCTGGAGATAAACAAGCgg                         >  1:2955963/1‑90 (MQ=255)
                                                                  gCCCCAGTAATAACGGCAGGGGGTGGTAAACAGGAGGTGGCTTTCAAAATGTTTACCCCGCCCCTGTAGCGCCTGGAGATAAACAGGCgg                         >  1:2508013/1‑90 (MQ=255)
                                                                  gCCCCAGTAATAACGGCAGGGGGTGGTAAACAGGAGATGGATTTCAAAATGTTTACCCAGCGCCTGTAGCGCCTGGAGATAAACAGGCgg                         >  1:2365458/1‑90 (MQ=255)
                                                                    cccAGTAATAACGGCAGGGGTTGGTAAACAGGAGATGGATTTCAATATGTTTACCCAGCGCCTGTAGCGCCTGGAGATAAACAGGCGGTa                       <  1:753010/90‑1 (MQ=255)
                                                                    cccAGTAATAACGGCAGGGGTTGGTAAACAGGAGATGGATTTCAATATGTTTACCCAGCGCCTGTAGCGCCTGGAGATAAACAGGCGGTa                       <  1:616396/90‑1 (MQ=255)
                                                                    cccAGTAATAACGGCAGGGGTTGGTAAACAGGAGATGGATTTCAATATGTTTACCCAGCGCCTGTAGCGCCTGGAGATAAACAGGCGGTa                       <  1:1228055/90‑1 (MQ=255)
                                                                      cAGTAATAACGGCAGGGGTTGGTAAACAGGAGATGGATTTCAATATGTTTACCCAGCGCCTGTAGCGCCTGGAGATAAACAGGCGGTAAc                     <  1:1771313/90‑1 (MQ=255)
                                                                      cAGTAATAACGGCAGGGGTTGGTAAACAGGAGATGGATTTCAATATGTTTACCCAGCGCCTGTAGCGCCTGGAGATAAACAGGCGGTAAc                     <  1:1622865/90‑1 (MQ=255)
                                                                      cAGTAATAACGGCAGGGGTTGGTAAACAGGAGATGGATTTCAATATGTTTACCCAGCGCCTGTAGCGCCTGGAGATAAACAGGCGGTAAc                     <  2:1252688/90‑1 (MQ=255)
                                                                        gTAATAACGGCAGGGGTTGGTAAACAGGAGATGGATTTCAATATGTTTACCCAGCGCCTGTAGCGCCTGGAGATAAACAGGCGGTAAcgc                   <  1:2796895/90‑1 (MQ=255)
                                                                        gTAATAACGGCAGGGGTTGGTAAACAGGAGAAGGATTTCAATATGTTTACCCAGCGCCTGTAGCGCCTGGAGATAAACAGGCGGTAAcgc                   <  2:913199/90‑1 (MQ=255)
                                                                             aaCGGCAGGGGTTGGTAAACAGGAGATGGATTTCAATATGTTTACCCAGCGCCTGTAGCGCCTGGAGATAAACAGGCGGTAACGCGGaaa              <  2:2151217/90‑1 (MQ=255)
                                                                                ggCAGGGGTTGGTAAACAGGAGATGGATTTCAATATGTTTACCCAGCGCCTGTAGCGCCTGGAGATAAACAGGCGGTAACGCGGAAATAc           <  2:841597/90‑1 (MQ=255)
                                                                                 gCAGGGGTTGGTAAACAGGAGATGGATTTCAATATGTTTACCCAGCGCCTGTAGCGCCTGGAGATAAACAGGCGGTAACGCGGAAATAcc          <  2:1725200/90‑1 (MQ=255)
                                                                                 gCAGGGGTTGGTAAACAGGAGATGGATTTCAATATGTTTACCCAGCGCCTGTAGCGCCTGGAGATAAACAGGCGGGAACGCGGAAAAAcc          >  1:2084513/1‑90 (MQ=255)
                                                                                  cAGGGGTTGGTAAACAGGAGATGGATTTCAATATGTTTACCCAGCGCCTGTAGCGCCTGGAGATAAACAGGCGGTAACGCGGAAATACCg         <  2:610504/90‑1 (MQ=255)
                                                                                  cAGGGGTTGGTAAACAGGAGATGGATTTCAATATGTTTACCCAGCGCCTGTAGCGCCTGGAGATAAACAGGCGGTAACGCGGAAATACCg         <  2:719920/90‑1 (MQ=255)
                                                                                  cAGGGGTTGGTAAACAGGAGATGGATTTCAATATGTTTACCCAGCGCCTGTAGCGCCTGGAGATAAACAGGCGGTAACGCGGAAATACCg         <  1:2899039/90‑1 (MQ=255)
                                                                                  cAGGGGGTGGTAAACAGGAGATGGATTTCAATATGTTTACCCAGCGCCTGTAGCGCCTGGAGATAAACAGGCGGGAACGCGGAAAAACCg         >  1:2480162/1‑90 (MQ=255)
                                                                                  cAGGGGGTGGTAAACAGGAGATGGATTTCAATATGTTTACCCAGCGCCTGTAGCGCCTGGAGATAAAAAGGCGGTAAAGCGGGAAAAccc         >  1:2730528/1‑89 (MQ=255)
                                                                                    ggggTTGGTAAACAGGAGATGGATTTCAATATGTTTACCCAGCGCCTGTAGCGCCTGga                                      >  2:2467357/1‑59 (MQ=255)
                                                                                    ggggTTGGTAAACAGGAGATGGATTTCAATATGTTTACCCAGCGCCTGTAGCGCCTGga                                      <  1:2467357/59‑1 (MQ=255)
                                                                                    ggggTTGGTAAACAGGAGATGGATTTCAATATGTTTACCCAGCGCCTGTAGCGCCTGGAGATAAACAGGCGGTAACGCGGAAATACCGCa       <  2:844213/90‑1 (MQ=255)
                                                                                         tGGTAAACAGGAGATGGATTTCAATATGTTTACCCAGCGCCTGTAGCGCCTGGAGATAAACAGGCGGTAACGCGGAAATACCGCATATaa  >  2:2776257/1‑90 (MQ=255)
                                                                                         tGGTAAACAGGAGATGGATTTCAATATGTTTACCCAGCGCCTGTAGCGCCTGGAGATAAACAGGCGGTAACGCGGAAATACCGCATATaa  >  2:1825538/1‑90 (MQ=255)
                                                                                         |                                                                                         
ATCTTCAAAACTGTGTCGACGCTGACGGGTCAGCAGTTTCGCCAGATAAGCAGGATCTTTAATATCGCCCCAGTAATAACGGCAGGGGTTGGTAAACAGGAGATGGATTTCAATATGTTTACCCAGCGCCTGTAGCGCCTGGAGATAAACAGGCGGTAACGCGGAAATACCGCATATAA  >  NZ_CP009273/2954975‑2955153

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 11 ≤ ATCG/ATCG < 25 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.