New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? NZ_CP009273 = 3769084156 (1.500)3 (0.030) 3/146 4.5 2.1% coding (153/588 nt) mtlR mannitol operon repressor MtlR
?NZ_CP009273 = 3769168 143 (1.560)coding (237/588 nt) mtlR mannitol operon repressor MtlR
Rejected: Coverage evenness skew score above cutoff.
Rejected: Frequency below/above cutoff threshold.

Only 100 of 158 total aligned reads displayed.

GGAACAAACCCAGGCCTTTGAAAACCGTGTGCTTGAGCGTCTGAATGCTGGCAAAACCGTGCGAAGCTTTCTGATCACCGCCGTCGAGCTCCTGACCGAGGCGGTAAATCTTCTGGTGCTTCAGGTATTCCGCAAAGACGATTACGCGGTGAAGTATGCTGTAGAACCGTTACTCGA  >  NZ_CP009273/3768997‑3769173
                                                                                       |                                                                                         
 gAACAAACCCAGGCCTTTGAAAACCGTGTGCTTGAGCGTCTGAATGCTGGCAAAACCGTGCGAAGCTTTCTGATCACCGCCGTCGAGCTc                                                                                        >  1:869754/1‑90 (MQ=255)
 gAACAAACCCAGGCCTTTGAAAACCGTGTGCTTGAGCGTCTGAATGCTGGCAAAACCGTGCGAAGCTTTCTGATCACCGCCGTCGAGCTc                                                                                        >  2:479479/1‑90 (MQ=255)
   aCAAACCCAGGCCTTTGAAAACCGTGTGCTTGAGCGTCTGAATGCTGGCAAAACCGTGCGAAGCTTTCTGATCACCGCCGTCGAGCTCCt                                                                                      >  1:1168512/1‑90 (MQ=255)
   aCAAACCCAGGCCTTTGAAAACCGTGTGCTTGAGCGTCTGAATGCTGGCAAAACCGTGCGAAGCTTTCTGATCACCGCCGTCGAGCTCCt                                                                                      >  2:824229/1‑90 (MQ=255)
     aaaCCCAGGCCTTTGAAAACCGTGTGCTTGAGCGTCTGAATGCTGGCAAAACCGTGCGAAGCTTTCTGATCACCGCCGTCGAGCTCCTGa                                                                                    >  1:1127845/1‑90 (MQ=255)
      aaCCCAGGCCTTTGAAAACCGTGTGCTTGAGCGTCTGAATGCTGGCAAAACCGTGCGAAGCTTTCTGATCACCGCCGTCGAGCTCCTGAc                                                                                   >  2:121631/1‑90 (MQ=255)
      aaCCCAGGCCTTTGAAAACCGTGTGCTTGAGCGTCTGAATGCTGGCAAAACCGTGCGAAGCTTTCTGATCACCGCCGTCGAGCTCCTGAc                                                                                   >  1:506964/1‑90 (MQ=255)
      aaCCCAGGCCTTTGAAAACCGTGTGCTTGAGCGTCTGAATGCTGGCAAAACCGTGCGAAGCTTTCTGATCACCGCCGTCGAGCTCCTGAc                                                                                   >  2:1880874/1‑90 (MQ=255)
      aaCCCAGGCCTTTGAAAACCGTGTGCTTGAGCGTCTGAATGCTGGCAAAACCGTGCGAAGCTTTCTGATCACCGCCGTCGAGCTCCTGAc                                                                                   >  2:276173/1‑90 (MQ=255)
      aaCCCAGGCCTTTGAAAACCGTGTGCTTGAGCGTCTGAATGCTGGCAAAACCGTGCGAAGCTTTCTGATCACCGCCGTCGAGCTCCTGAc                                                                                   >  1:3007432/1‑90 (MQ=255)
        cccAGGCCTTTGAAAACCGTGTGCTTGAGCGTCTGAATGCTGGCAAAACCGTGCGAAGCTTTCTGATCACCGCCGTCGAGCTCCTGACCg                                                                                 >  2:1849794/1‑90 (MQ=255)
          cAGGCCTTTGAAAACCGTGTGCTTGAGCGTCTGAATGCTGGCAAAACCGTGCGAAGCTTTCTGATCACCGCCGTCGAGCTCCTGACCGAg                                                                               <  1:417842/90‑1 (MQ=255)
          cAGGCCTTTGAAAACCGTGTGCTTGAGCGTCTGAATGCTGGCAAAACCGTGCGAAGCTTTCTGATCACCGCCGTCGAGCTCCTGACCGAg                                                                               <  1:1115781/90‑1 (MQ=255)
           aGGCCTTTGAAAACCGTGTGCTTGAGCGTCTGAATGCTGGCAAAACCGTGCGAAGCTTTCTGATCACCGCCGTCGAGCTCCTGACCGAgg                                                                              >  2:21696/1‑90 (MQ=255)
           aGGCCTTTGAAAACCGTGTGCTTGAGCGTCTGAATGCTGGCAAAACCGTGCGAAGCTTTCTGATCACCGCCGTCGAGCTCCTGACCGAgg                                                                              >  1:2521386/1‑90 (MQ=255)
           aGGCCTTTGAAAACCGTGTGCTTGAGCGTCTGAATGCTGGCAAAACCGTGCGAAGCTTTCTGATCACCGCCGTCGAGCTCCTGACCGAgg                                                                              >  1:588997/1‑90 (MQ=255)
             gCCTTTGAAAACCGTGTGCTTGAGCGTCTGAATGCTGGCAAAACCGTGCGAAGCTTTCTGATCACCGCCGTCGAGCTCCTGACCGAGGCg                                                                            <  2:1196251/90‑1 (MQ=255)
             gCCTTTGAAAACCGTGTGCTTGAGCGTCTGAATGCTGGCAAAACCGTGCGAAGCTTTCTGATCACCGCCGTCGAGCTCCTGACCGAGGCg                                                                            <  1:10186/90‑1 (MQ=255)
                tttGAAAACCGTGTGCTTGAGCGTCTGAATGCTGGCAAAACCGTGCGAAGCTTTCTGATCACCGCCGTCGAGCTCCTGACCGAGGCGGTa                                                                         <  2:1324117/90‑1 (MQ=255)
                tttGAAAACCGTGTGCTTGAGCGTCTGAATGCTGGCAAAACCGTGCGAAGCTTTCTGATCACCGCCGTCGAGCTCCTGACCGAGGCGGTa                                                                         >  2:1362264/1‑90 (MQ=255)
                tttGAAAACCGTGTGCTTGAGCGTCTGAATGCTGGCAAAACCGTGCGAAGCTTTCTGATCACCGCCGTCGAGCTCCTGACCGAGGCGGTa                                                                         <  1:1788767/90‑1 (MQ=255)
                 ttGAAAACCGTGTGCTTGAGCGTCTGAATGCTGGCAAAACCGTGCGAAGCTTTCTGATCACCGCCGTCGAg                                                                                           <  2:2456576/71‑1 (MQ=255)
                 ttGAAAACCGTGTGCTTGAGCGTCTGAATGCTGGCAAAACCGTGCGAAGCTTTCTGATCACCGCCGTCGAGCTCCTGACCGAGGCGGTaa                                                                        >  1:59751/1‑90 (MQ=255)
                 ttGAAAACCGTGTGCTTGAGCGTCTGAATGCTGGCAAAACCGTGCGAAGCTTTCTGATCACCGCCGTCGAGCTCCTGACCGAGGCGGTaa                                                                        >  1:1716064/1‑90 (MQ=255)
                 ttGAAAACCGTGTGCTTGAGCGTCTGAATGCTGGCAAAACCGTGCGAAGCTTTCTGATCACCGCCGTCGAGCTCCTGACCGAGGCGGTaa                                                                        >  1:437460/1‑90 (MQ=255)
                 ttGAAAACCGTGTGCTTGAGCGTCTGAATGCTGGCAAAACCGTGCGAAGCTTTCTGATCACCGCCGTCGAGCTCCTGACCGAGGCGGTaa                                                                        >  2:1477569/1‑90 (MQ=255)
                        ccGTGTGCTTGAGCGTCTGAATGCTGGCAAAACCGTGCGAAGCTTTCTGATCACCGCCGTCGAGCTCCTGACCGAGGCGGTAAAtcttct                                                                 >  2:1235951/1‑90 (MQ=255)
                        ccGTGTGCTTGAGCGTCTGAATGCTGGCAAAACCGTGCGAAGCTTTCTGATCACCGCCGTCGAGCTCCTGACCGAGGCGGTAAAtcttct                                                                 >  2:2198053/1‑90 (MQ=255)
                        ccGTGTGCTTGAGCGTCTGAATGCTGGCAAAACCGTGCGAAGCTTTCTGATCACCGCCGTCGAGCTCCTGACCGAGGCGGTAAAtcttct                                                                 >  1:644782/1‑90 (MQ=255)
                         cGTGTGCTTGAGCGTCTGAATGCTGGCAAAACCGTGCGAAGCTTTCTGATCACCGCCGTCGAGCTCCTGACCGAGGCGGTAAATCTTCTg                                                                >  2:2475869/1‑90 (MQ=255)
                          gtgtGCTTGAGCGTCTGAATGCTGGCAAAACCGTGCGAAGCTTTCTGATCACCGCCGTCGAGCTCCTGACCGAGGCGGTAAATCTTCTgg                                                               <  2:1795499/90‑1 (MQ=255)
                          gtgtGCTTGAGCGTCTGAATGCTGGCAAAACCGTGCGAAGCTTTCTGATCACCGCCGTCGAGCTCCTGACCGAGGCGGTAAATCTTCTgg                                                               >  1:1822486/1‑90 (MQ=255)
                          gtgtGCTTGAGCGTCTGAATGCTGGCAAAACCGTGCGAAGCTTTCTGATCACCGCCGTCGAGCTCCTGACCGAGGCGGTAAATCTTCTgg                                                               >  2:2350542/1‑90 (MQ=255)
                          gtgtGCTTGAGCGTCTGAATGCTGGCAAAACCGTGCGAAGCTTTCTGATCACCGCCGTCGAGCTCCTGACCGAGGCGGTAAATCTTCTgg                                                               >  1:845242/1‑90 (MQ=255)
                          gtgtGCTTGAGCGTCTGAATGCTGGCAAAACCGTGCGAAGCTTTCTGATCACCGCCGTCGAGCTCCTGACCGAGGCGGTAAATCTTCTgg                                                               >  2:2414742/1‑90 (MQ=255)
                          gtgtGCTTGAGCGTCTGAATGCTGGCAAAACCGTGCGAAGCTTTCTGATCACCGCCGTCGAGCTCCTGACCGAGGCGGTAAATCTTCTgg                                                               >  1:2588409/1‑90 (MQ=255)
                           tgtgCTTGAGCGTCTGAATGCTGGCAAAACCGTGCGAAGCTTTCTGATCACCGCCGTCGAGCTCCTGACCGAGGCGGTAAATCTTCTGGt                                                              >  1:2657610/1‑90 (MQ=255)
                            gtgCTTGAGCGTCTGAATGCTGGCAAAACCGTGCGAAGCTTTCTGATCACCGCCGTCGAGCTCCTGACCGAGGCGGTAAATCTTCTGGTg                                                             <  1:154131/90‑1 (MQ=255)
                                 tGAGCGTCTGAATGCTGGCAAAACCGTGCGAAGCTTTCTGATCACCGCCGTCGAGCTCCTGACCGAGGCGGTAAATCTTCTGGTGCTTCa                                                        <  2:1427128/90‑1 (MQ=255)
                                    gCGTCTGAATGCTGGCAAAACCGTGCGAAGCTTTCTGATCACCGCCGTCGAGCTCCTGACCGAGGCGGTAAATCTTCTGGTGCTTCAGGt                                                     >  2:536051/1‑90 (MQ=255)
                                      gTCTGAATGCTGGCAAAACCGTGCGAAGCTTTCTGATCACCGCCGTCGAGCTCCTGACCGAGGCGGTAAATCTTCTGGTGCTTCAGGTAt                                                   <  1:529031/90‑1 (MQ=255)
                                      gTCTGAATGCTGGCAAAACCGTGCGAAGCTTTCTGATCACCGCCGTCGAGCTCCTGACCGAGGCGGTAAATCTTCTGGTGCTTCAGGTAt                                                   <  2:2657610/90‑1 (MQ=255)
                                       tCTGAATGCTGGCAAAACCGTGCGAAGCTTTCTGATCACCGCCGTCGAGCTCCTGACCGAGGCGGTAAATCTTCTGGTGCTTCAGGTAtt                                                  <  2:2468915/90‑1 (MQ=255)
                                         tGAATGCTGGCAAAACCGTGCGAAGCTTTCTGATCACCGCCGTCGAGCTCCTGACCGAGGCGGTAAATCTTCTGGTGCTTCAGGTATTcc                                                <  2:1566257/90‑1 (MQ=255)
                                         tGAATGCTGGCAAAACCGTGCGAAGCTTTCTGATCACCGCCGTCGAGCTCCTGACCGAGGCGGTAAATCTTCTGGTGCTTCAGGTATTcc                                                >  2:1047654/1‑90 (MQ=255)
                                            aTGCTGGCAAAACCGTGCGAAGCTTTCTGATCACCGCCGTCGAGCTCCTGACCGAgg                                                                              <  1:1506182/57‑1 (MQ=255)
                                               cTGGCAAAACCGTGCGAAGCTTTCTGATCACCGCCGTCGAGCTCCTGACCGAGGCGGTAAATCTTCTGGTGCTTCAGGTATTCCGCAAAg                                          <  2:1823538/90‑1 (MQ=255)
                                                tGGCAAAACCGTGCGAAGCTTTCTGATCACCGCCGTCGAGCTCCTGACCGAGGCGGTAAATCTTCTGGTGCTTCAGGTATTCCGCAAAGa                                         >  1:2966801/1‑90 (MQ=255)
                                                 ggCAAAACCGTGCGAAGCTTTCTGATCACCGCCGTCGAGCTCCTGACCGAGGCGGTAAATCTTCTGGTGCTTCAGGTATTCCGCAAAGAc                                        >  2:2731972/1‑90 (MQ=255)
                                                 ggCAAAACCGTGCGAAGCTTTCTGATCACCGCCGTCGAGCTCCTGACCGAGGCGGTAAATCTTCTGGTGCTTCAGGTATTCCGCAAAGAc                                        >  2:919275/1‑90 (MQ=255)
                                                 ggCAAAACCGTGCGAAGCTTTCTGATCACCGCCGTCGAGCTCCTGACCGAGGCGGTAAATCTTCTGGTGCTTCAGGTATTCCGCAAAGAc                                        >  1:486873/1‑90 (MQ=255)
                                                 ggCAAAACCGTGCGAAGCTTTCTGATCACCGCCGTCGAGCTCCTGACCGAGGCGGTAAATCTTCTGGTGCTTCAGGTATTCCGCAAAGAc                                        >  2:311892/1‑90 (MQ=255)
                                                 ggCAAAACCGTGCGAAGCTTTCTGATCACCGCCGTCGAGCTCCTGACCGAGGCGGTAAATCTTCTGGTGCTTCAGGTATTCCGCAAAGAc                                        >  2:505718/1‑90 (MQ=255)
                                                      aaCCGTGCGAAGCTTTCTGATCACCGCCGTCGAGCTCCTGACCGAGGCGGTAAATCTTCTGGTGCTTCAGGTATTCCGCAAAGACGATTa                                   <  2:2842748/90‑1 (MQ=255)
                                                      aaCCGTGCGAAGCTTTCTGATCACCGCCGTCGAGCTCCTGACCGAGGCGGTAAATCTTCTGGTGCTTCAGGTATTCCGCAAAGACGATTa                                   <  1:2350542/90‑1 (MQ=255)
                                                         cGTGCGAAGCTTTCTGATCACCGCCGTCGAGCTCCTGACCGAGGCGGTAAATCTTCTGGTGCTTCAGGTATTCCGCAAAGACGATTAcgc                                <  1:794115/90‑1 (MQ=255)
                                                         cGTGCGAAGCTTTCTGATCACCGCCGTCGAGCTCCTGACCGAGGCGGTAAATCTTCTGGTGCTTCAGGTATTCCGCAAAGACGATTAcgc                                <  2:1582425/90‑1 (MQ=255)
                                                          gTGCGAAGCTTTCTGATCACCGCCGTCGAGCTCCTGACCGAGGCGGTAAATCTTCTGGTGCTTCAGGTATTCCGCAAAGACGATTAcgcg                               >  1:146255/1‑90 (MQ=255)
                                                           tGCGAAGCTTTCTGATCGCCGCCGTCGAGCTCCTGACCGAGGCGGTAAATCTTCTGGTGCTTCAGGTATTCCGCAAAGACGATTACGCgg                              <  2:1769532/90‑1 (MQ=255)
                                                           tGCGAAGCTTTCTGATCACCGCCGTCGAGCTCCTGACCGAGGCGGTAAATCTTCTGGTGCTTCAGGTATTCCGCAAAGACGATTAcgc                                <  1:1967825/88‑1 (MQ=255)
                                                           tGCGAAGCTTTCTGATCACCGCCGTCGAGCTCCTGACCGAGGCGGTAAATCTTCTGGTGCTTCAGGTATTCCGCAAAGACGATTACGCgg                              <  1:1406947/90‑1 (MQ=255)
                                                           tGCGAAGCTTTCTGATCACCGCCGTCGAGCTCCTGACCGAGGCGGTAAATCTTCTGGTGCTTCAGGTATTCCGCAAAGACGATTACGCgg                              <  2:290446/90‑1 (MQ=255)
                                                           tGCGAAGCTTTCTGATCACCGCCGTCGAGCTCCTGACCGAGGCGGTAAATCTTCTGGTGCTTCAGGTATTCCGCAAAGACGATTACGCgg                              <  2:2562227/90‑1 (MQ=255)
                                                           tGCGAAGCTTTCTGATCACCGCCGTCGAGCTCCTGACCGAGGCGGTAAATCTTCTGGTGCTTCAGGTATTCCGCAAAGACGATTACGCgg                              >  2:2565170/1‑90 (MQ=255)
                                                           tGCGAAGCTTTCTGATCACCGCCGTCGAGCTCCTGACCGAGGCGGTAAATCTTCTGGTGCTTCAGGTATTCCGCAAAGACGATTACGCgg                              <  1:276173/90‑1 (MQ=255)
                                                           tGCGAAGCTTTCTGATCACCGCCGTCGAGCTCCTGACCGAGGCGGTAAATCTTCTGGTGCTTCAGGTATTCCGCAAAGACGATTACGCgg                              <  2:303301/90‑1 (MQ=255)
                                                           tGCGAAGCTTTCTGATCACCGCCGTCGAGCTCCTGACCGAGGCGGTAAATCTTCTGGTGCTTCAGGTATTCCGCAAAGACGATTACGCgg                              <  1:265305/90‑1 (MQ=255)
                                                           tGCGAAGCTTTCTGATCACCGCCGTCGAGCTCCTGACCGAGGCGGTAAATCTTCTGGTGCTTCAGGTATTCCGCAAAGACGATTACGCgg                              <  2:146255/90‑1 (MQ=255)
                                                           tGCGAAGCTTTCTGATCACCGCCGTCGAGCTCCTGACCGAGGCGGTAAATCTTCTGGTGCTTCAGGTATTCCGCAAAGACGATTACGCgg                              <  1:232835/90‑1 (MQ=255)
                                                           tGCGAAGCTTTCTGATCACCGCCGTCGAGCTCCTGACCGAGGCGGTAAATCTTCTGGGGCTTCAGGTATTCCGCAAAGACGATTAcgc                                >  2:1967825/1‑88 (MQ=255)
                                                              gAAGCTTTCTGATCACCGCCGTCGAGCTCCTGACCGAGGCGGTAAATCTTCTGGTGCTTCAGGTATTCCGCAAAGACGATTACGCGGTGa                           <  2:3013232/90‑1 (MQ=255)
                                                              gAAGCTTTCTGATCACCGCCGTCGAGCTCCTGACCGAGGCGGTAAATCTTCTGGTGCTTCAGGTATTCCGCAAAGACGATTACGCGGTGa                           <  2:869754/90‑1 (MQ=255)
                                                              gAAGCTTTCTGATCACCGCCGTCGAGCTCCTGACCGAGGCGGTAAATCTTCTGGTGCTTCAGGTATTCCGCAAAGACGATTACGCGGTGa                           <  1:281247/90‑1 (MQ=255)
                                                              gAAGCTTTCTGATCACCGCCGTCGAGCTCCTGACCGAGGCGGTAAATCTTCTGGTGCTTCAGGTATTCCGCAAAGACGATTACGCGGTGa                           <  1:1430862/90‑1 (MQ=255)
                                                                aGCTTTCTGATCACCGCCGTCGAGCTCCTGACCGAGGCGGTAAATCTTCTGGTGCTTCAGGTATTCCGCAAAGACGATTACGCGGTGAAg                         <  1:824229/90‑1 (MQ=255)
                                                                  cTTTCTGATCACCGCCGTCGAGCTCCTGACCGAGGCGGTAAATCTTCTGGTGCTTCAGGTATTCCGCAAAGACGATTACGCGGTGAAGTa                       >  2:664407/1‑90 (MQ=255)
                                                                   tttCTGATCACCGCCGTCGAGCTCCTGACCGAGGCGGTAAATCTTCTGGTGCTTCAGGTATTCCGCAAAGACGATTACGCGGTGAAGTAt                      <  1:1264081/90‑1 (MQ=255)
                                                                   tttCTGATCACCGCCGTCGAGCTCCTGACCGAGGCGGTAAATCTTCTGGTGCTTCAGGTATTCCGCAAAGACGATTACGCGGTGAAGTAt                      <  1:1148095/90‑1 (MQ=255)
                                                                   tttCTGATCACCGCCGTCGAGCTCCTGACCGAGGCGGTAAATCTTCTGGTGCTTCAGGTATTCCGCAAAGACGATTACGCGGTGAAGTAt                      <  1:2414742/90‑1 (MQ=255)
                                                                   tttCTGATCACCGCCGTCGAGCTCCTGACCGAGGCGGTAAATCTTCTGGTGCTTCAGGTATTCCGCAAAGACGATTACGCGGTGAAGTAt                      <  2:1030059/90‑1 (MQ=255)
                                                                   tttCTGATCACCGCCGTCGAGCTCCTGACCGAGGCGGTAAATCTTCTGGTGCTTCAGGTATTCCGCAAAGACGATTACGCGGTGAAGTAt                      <  1:1880874/90‑1 (MQ=255)
                                                                   tttCTGATCACCGCCGTCGAGCCCCTGACCGAGGCGGTAAATCTTCTGGTGCTTCAGGTATTCCGCAAAGACGATTACGCGGTGAAGTAt                      <  1:1442788/90‑1 (MQ=255)
                                                                    ttCTGATCACCGCCGTCGAGCTCCTGACCGAGGCGGTAAATCTTCTGGTGCTTCAGGTATTCCGCAAAGACGATTACGCGGTGAAGTATg                     >  1:1902204/1‑90 (MQ=255)
                                                                          tCACCGCCGTCGAGCTCCTGACCGAGGCGGTAAATCTTCTGGTGCTTCAGGTATTCCGCAAAGACGATTACGCGGTGAAGTATGCTGTAg               <  1:246861/90‑1 (MQ=255)
                                                                          tCACCGCCGTCGAGCTACTGACCGAGGCGGTAAATCTTCTGGTGCTTCAGGTATTCCGCAAAGACGATTACGCGGTGAAGTATGCTGTAg               <  1:2026127/90‑1 (MQ=255)
                                                                           cACCGCCGTCGAGCTCCTGACCGAGGCGGTAAATCTTCTGGTGCt                                                           <  1:2064156/45‑1 (MQ=255)
                                                                           cACCGCCGTCGAGCTCCTGACCGAGGCGGTAAATCTTCTGGTGCt                                                           >  2:2064156/1‑45 (MQ=255)
                                                                           cACCGCCGTCGAGCTCCTGACCGAGGCGGTAAATCTTCTGGTGCTTCa                                                        >  1:1023757/1‑48 (MQ=255)
                                                                           cACCGCCGTCGAGCTCCTGACCGAGGCGGTAAATCTTCTGGTGCTTCa                                                        <  2:1023757/48‑1 (MQ=255)
                                                                           cACCGCCGTCGAGCTCCTGACCGAGGCGGTAAATCTTCTGGTGCTTCAGGTATTCCGCAAAGACGATTACGCGGTGAAGTATGCTGTAGa              >  2:2270751/1‑90 (MQ=255)
                                                                           cACCGCCGTCGAGCTCCTGACCGAGGCGGTAAATCTTCTGGTGCTTCAGGTATTCCGCAAAGACGATTACGCGGTGAAGTATGCTGTAGa              >  2:2126278/1‑90 (MQ=255)
                                                                           cACCGCCGTCGAGCTCCTGACCGAGGCGGTAAATCTTCTGGTGCTTCAGGTATTCCGCAAAGACGATTACGCGGTGAAGTATGCTGTAGa              <  2:1243695/90‑1 (MQ=255)
                                                                           cACCGCCGTCGAGCTCCTGACCGAGGCGGTAAATCTTCTGGTGCTTCAGGTATTCCGCAAAGACGATTACGCGGTGAAGTATGCTGTAGa              <  2:845242/90‑1 (MQ=255)
                                                                           cACCGCCGTCGAGCTCCTGACCGAGGCGGTAAATCTTCTGGTGCTTCAGGTATTCCGCAAAGACGATTACGCGGTGAAGTATGCTGTAGa              >  1:2771534/1‑90 (MQ=255)
                                                                           cACCGCCGTCGAGCTCCTGACCGAGGCGGTAAATCTTCTGGTGCTTCAGGTATTCCGCAAAGACGATTACGCGGTGAAGTATGCTGTAGa              <  2:954932/90‑1 (MQ=255)
                                                                            aCCGCCGTCGAGCTCCTGACCGAGGCGGTAAATCTTCTGGTGCTTCAGGTATTCCGCAAAGACGATTACGCGGTGAAGTATGCTGTAGaa             >  1:2438562/1‑90 (MQ=255)
                                                                             ccgccgTCGAGCTCCTGACCGAGGCGGTAAATCTTCTGGTGCTTCAGGTATTCCGCAAAGACGATTACGCGGTGAAGTATGc                    >  2:2236220/1‑82 (MQ=255)
                                                                              cgccgTCGAGCTCCTGACCGAGGCGGTAAATCTTCTGGTGCTTCAGGTATTCCGCAAAGACGATTACGCGGTGAAGTATGCTGTAGAAcc           <  1:463110/90‑1 (MQ=255)
                                                                               gccgTCGAGCTCCTGACCGAGGCGGTAAATCTTCTGGTGCTTCAGGTATTCCGCAAAGACGATTACGCGGTGAAGTATGCTGTAGAACCg          <  1:406122/90‑1 (MQ=255)
                                                                                       gCTCCTGACCGAGGCGGTAAATCTTCTGGTGCTTCAGGTATTCCGCAAAGACGATTACGCGGTGAAGTATGCTGTAGAACCGTTACTCGa  >  2:510773/1‑90 (MQ=255)
                                                                                       |                                                                                         
GGAACAAACCCAGGCCTTTGAAAACCGTGTGCTTGAGCGTCTGAATGCTGGCAAAACCGTGCGAAGCTTTCTGATCACCGCCGTCGAGCTCCTGACCGAGGCGGTAAATCTTCTGGTGCTTCAGGTATTCCGCAAAGACGATTACGCGGTGAAGTATGCTGTAGAACCGTTACTCGA  >  NZ_CP009273/3768997‑3769173

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 29 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.