New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? NZ_CP009273 = 3769084156 (1.500)3 (0.030) 3/146 4.5 2.1% coding (153/588 nt) mtlR mannitol operon repressor MtlR
?NZ_CP009273 = 3769168 143 (1.560)coding (237/588 nt) mtlR mannitol operon repressor MtlR
Rejected: Coverage evenness skew score above cutoff.
Rejected: Frequency below/above cutoff threshold.

Only 100 of 156 total aligned reads displayed.

GTCGAGCTCCTGACCGAGGCGGTAAATCTTCTGGTGCTTCAGGTATTCCGCAAAGACGATTACGCGGTGAAGTATGCTGTAGAACCGTTACTCGACGGCGATGGTCCGCTGGGCGATCTTTCTGTGCGTTTAAAACTCATTTACGGGTTGGGCGTCATTAACCGCCAGGAATACGAAG  >  NZ_CP009273/3769079‑3769256
                                                                                         |                                                                                        
gTCGAGCTCCTGACCGAGGCGGTAAATCTTCTGGTGCTTCAGGTATTCCGCAAAGACGATTACGCGGGGAAGTATGCGGTAGAACCGTTa                                                                                          >  1:2758432/1‑90 (MQ=255)
     gCTCCTGACCGAGGCGGTAAATCTTCTGGTGCTTCAGGTATTCCGCAAAGACGATTACGCGGTGAAGTATGCTGTAGAACCGTTACTCGa                                                                                     >  2:510773/1‑90 (MQ=255)
      cTCCTGACCGAGGCGGTAAATCTTCTGGTGCTTCAGGTATTCCGCAAAGACGATTACGCGGTGAAGTATGCTGTAGAACCGTTACTCGAc                                                                                    <  1:1637162/90‑1 (MQ=255)
      cTCCTGACCGAGGCGGTAAATCTTCTGGTGCTTCAGGTATTCCGCAAAGACGATTACGCGGTGAAGTATGCTGTAGAACCGTTACTCGAc                                                                                    <  1:1019073/90‑1 (MQ=255)
      cTCCTGACCGAGGCGGTAAATCTTCTGGTGCTTCAGGTATTCCGCAAAGACGATTACGCGGTGAAGTATGCTGTAGAACCGTTACTCGAc                                                                                    <  1:505718/90‑1 (MQ=255)
         cTGACCGAGGCGGTAAATCTTCTGGTGCTTCAGGTATTCCGCAAAGACGATTACGCGGTGAAGTATGCTGTAGAACCGTTACTCGACGGc                                                                                 <  1:2737213/90‑1 (MQ=255)
          tGACCGAGGCGGTAAATCTTCTGGTGCTTCAGGTATTCCGCAAAGACGATTACGCGGTGAAGTATGCTGTAGAACCGTTACTCGACGGCg                                                                                >  1:1212335/1‑90 (MQ=255)
          tGACCGAGGCGGTAAATCTTCTGGTGCTTCAGGTATTCCGCAAAGACGATTACGCGGTGAAGTATGCTGTAGAACCGTTACTCGACGGCg                                                                                >  2:611397/1‑90 (MQ=255)
           gACCGAGGCGGTAAATCTTCTGGTGCTTCAGGTATTCCGCAAAGACGATTACGCGGTGAAGTATGCTGTAGAACCGTTACTCGACGGCGa                                                                               <  2:2340455/90‑1 (MQ=255)
               gAGGCGGTAAATCTTCTGGTGCTTCAGGTATTCCGCAAAGACGATTACGCGGTGAAGTATGCTGTAGAACCGTTACTCGACGGCGATGGt                                                                           >  1:2492066/1‑90 (MQ=255)
               gAGGCGGTAAATCTTCTGGTGCTTCAGGTATTCCGCAAAGACGATTACGCGGGGAAGTATGCTGTAGAACCGTTACTCGACGGCGATGGt                                                                           >  1:1403202/1‑90 (MQ=255)
               gAGGCGGTAAATCTTCTGGTGCTTCAGGTATTCCGCAAAGACGATTACGAGGTGAAGTATGCTGTAGAACCGTTACTCGACGGCGATGGt                                                                           >  2:2803871/1‑90 (MQ=255)
                aGGCGGTAAATCTTCTGGTGCTTCAGGTATTCCGCAAAGACGATTACGCGGTGAAGTATGCTGTAGAACCGTTACTCGACGGCGATGGTc                                                                          >  2:2115061/1‑90 (MQ=255)
                   cGGTAAATCTTCTGGTGCTTCAGGTATTCCGCAAAGACGATTACGCGGTGAAGTATGCTGTAGAACCGTTACTCGACGGCGATGGTCCGc                                                                       <  1:2390407/90‑1 (MQ=255)
                    ggTAAATCTTCTGGTGCTTCAGGTATTCCGCAAAGACGATTACGCGGTGAAGTATGCTGTAGAACCGTTACTCGACGGCGGTGATcagaa                                                                      <  1:1218344/90‑5 (MQ=255)
                     gTAAATCTTCTGGTGCTTCAGGTATTCCGCAAAGACGATTACGCGGTGAAGTATGCTGTAGAACCGTTACTCGACGGCGATGGTCCGCTg                                                                     >  1:598144/1‑90 (MQ=255)
                      tAAATCTTCTGGTGCTTCAGGTATTCCGCAAAGACGATTACGCGGTGAAGTATGCTGTAGAACCGTTACTCGACGGCGATGGTCCGCTgg                                                                    <  1:1024735/90‑1 (MQ=255)
                        aaTCTTCTGGTGCTTCAGGTATTCCGCAAAGACGATTACGCGGTGAAGTATGCTGTAGAACCGTTACTCGACGGCGATGGTCCGCTGGGc                                                                  <  2:2148698/90‑1 (MQ=255)
                        aaTCTTCTGGTGCTTCAGGTATTCCGCAAAGACGATTACGCGGTGAAGTATGCTGTAGAACCGTTACTCGACGGCGATGGTCCGCTGGGc                                                                  <  1:2270751/90‑1 (MQ=255)
                          tcttctGGTGCTTCAGGTATTCCGCAAAGACGATTACGCGGTGAAGTATGCTGTAGAACCGTTACTCGACGGCGATGGTCCGCTGGGCGa                                                                <  1:311892/90‑1 (MQ=255)
                              ctGGTGCTTCAGGTATTCCGCAAAGACGATTACGCGGTGAAGTATGCTGTAGAACCGTTACTCGACGGCGATGGTCCGCTGGGCGATCtt                                                            >  2:1471186/1‑90 (MQ=255)
                               tGGTGCTTCAGGTATTCCGCAAAGACGATTACGCGGTGAAGTATGCTGTAGAACCGTTACTCGACGGCGATGGTCCGCTGGGCGATCttt                                                           >  2:2472012/1‑90 (MQ=255)
                                   gCTTCAGGTATTCCGCAAAGACGATTACGCGGTGAAGTATGCTGTAGAACCGTTACTCGACGGCGATGGTCCGCTGGGCGATCTTTCtgt                                                       >  1:546845/1‑90 (MQ=255)
                                   gCTTCAGGTATTCCGCAAAGACGATTACGCGGTGAAGTATGCTGTAGAACCGTTACTCGACGGCGACGGTCCGCTGGGCGATCTTTCtgt                                                       >  1:187896/1‑90 (MQ=255)
                                    cTTCAGGTATTCCGCAAAGACGATTACGCGGTGAAGTATGCTGTAGAACCGTTACTCGACGGCGATGGTCCGCTGGGCGATCTTTCtgtg                                                      <  2:1127845/90‑1 (MQ=255)
                                    cTTCAGGTATTCCGCAAAGACGATTACGCGGTGAAGTATGCTGTAGAACCGTTACTCGACGGCGATGGTCCGCTGGGCGATCTTTCtgtg                                                      <  2:811883/90‑1 (MQ=255)
                                    cTTCAGGTATTCCGCAAAGACGATTACGCGGTGAAGTATGCTGTAGAACCGTTACTCGACGGCGATGGTCCGCTGGGCGATCTTTCtgtg                                                      <  1:2225369/90‑1 (MQ=255)
                                    cTTCAGGTATTCCGCAAAGACGATTACGCGGTGAAGTATGCTGTAGAACCGTTACTCGACGGCGATGGTCCGCTGGGCGATCTTTCtgtg                                                      <  1:1435992/90‑1 (MQ=255)
                                    cTTCAGGTATTCCGCAAAGACGATTACGCGGTGAAGTATGCTGTAGAACCGTTACTCGACGGCGATGGTCCGCTGGGCGATCTTTCtgtg                                                      <  2:2492066/90‑1 (MQ=255)
                                     ttCAGGTATTCCGCAAAGACGATTACGCGGTGAAGTATGCTGTAGAACCGTTACTCGACGGCGATGGTCCGCTGGGCGATCTTTCTGTGc                                                     >  1:1513518/1‑90 (MQ=255)
                                             ttCCGCAAAGACGATTACGCGGTGAAGTATGCTGTAGAACCGTTACTCGACGGCGATGGTCCGCTGGGCGATCTTTCTGTGCGTTTaaaa                                             >  1:1137690/1‑90 (MQ=255)
                                              tCCGCAAAGACGATTACGCGGTGAAGTATGCTGTAGAACCGTTACTCGACGGCGATGGTCCGCTGGGCGATCTTTCtgtg                                                      >  2:2929616/1‑80 (MQ=255)
                                              tCCGCAAAGACGATTACGCGGTGAAGTATGCTGTAGAACCGTTACTCGACGGCGATGGTCCGCTGGGCGATCTTTCtgtg                                                      <  1:2929616/80‑1 (MQ=255)
                                              tCCGCAAAGACGATTACGCGGTGAAGTATGCTGTAGAACCGTTACTCGACGGCGATGGTCCGCTGGGCGATCTTTCTGTGCGTTTAAAAc                                            >  1:784208/1‑90 (MQ=255)
                                              tCCGCAAAGACGATTACGCGGTGAAGTATGCTGTAGAACCGTTACTCGACGGCGATGGTCCGCTGGGCGATCTTTCTGTGCGTTTAAAAc                                            >  2:2773325/1‑90 (MQ=255)
                                               ccGCAAAGACGATTACGCGGTGAAGTATGCTGTAGAACCGTTACTCGACGGCGATGGTCCGCTGGGCGATCTTTCTGTGCGTTTAAAACt                                           >  2:1713354/1‑90 (MQ=255)
                                                 gCAAAGACGATTACGCGGTGAAGTATGCTGTAGAACCGTTACTCGACGGCGATGGTCCGCTGGGCGATCTTTCTGTGCGTTTAAAACTCa                                         >  2:1509965/1‑90 (MQ=255)
                                                 gCAAAGACGATTACGCGGTGAAGTATGCTGTAGAACCGTTACTCGACGGCGATGGTCCGCTGGGCGATCTTTCTGTGCGTTTAAAACTCa                                         >  1:1858299/1‑90 (MQ=255)
                                                  cAAAGACGATTACGCGGTGAAGTATGCTGTAGAACCGTTACTCGACGGCGATGGTCCGCTGGGCGATCTTTCTGTGCGTTTAAAACTCAt                                        <  1:1235951/90‑1 (MQ=255)
                                                    aaGACGATTACGCGGTGAAGTATGCTGTAGAACCGTTACTCGACGGCGATGGTCCGCTGGGCGATCTTTCTGTGCGTTTAAAACTCAttt                                      <  1:1849794/90‑1 (MQ=255)
                                                      gACGATTACGCGGTGAAGTATGCTGTAGAACCGTTACTCGACGGCGATGGTCCGCTGGGCGATCTTTCTGTGCGTTTAAAACTCATTTAc                                    <  2:1513518/90‑1 (MQ=255)
                                                         gATTACGCGGTGAAGTATGCTGTAGAACCGTTACTCGACGGCGATGGTCCGCTGGGCGATCTTTCtgtg                                                      <  2:1649896/69‑1 (MQ=255)
                                                         gATTACGCGGTGAAGTATGCTGTAGAACCGTTACTCGACGGCGATGGTCCGCTGGGCGATCTTTCTGTGCGTTTAAAACTCATTTACggg                                 >  1:2296372/1‑90 (MQ=255)
                                                         gATTACGCGGTGAAGTATGCTGTAGAACCGTTACTCGACGGCGATGGTCCGCTGGGCGATCTTTCTGTGCGTTTAAAACTCATTTACggg                                 >  2:1798889/1‑90 (MQ=255)
                                                         gATTACGCGGTGAAGTATGCTGTAGAACCGTTACTCGACGGCGATGGTCCGCTGGGCGATCTTTCTGTGCGTTTAAAACTCATTTACggg                                 >  1:1529243/1‑90 (MQ=255)
                                                         gATTACGCGGTGAAGTATGCTGTAGAACCGTTACTCGACGGCGATGGTCCGCTGGGCGATCTTTCTGTGCGTTTAAAACTCATTTACggg                                 >  1:1624349/1‑90 (MQ=255)
                                                              cgcgGTGAAGTATGCTGTAGAACCGTTACTCGACGGCGATGGTCCGCTGGGCGATCTTTCTGTGCGTTTAAAACTCATTTACGGGTTggg                            <  2:301615/90‑1 (MQ=255)
                                                               gcgGTGAAGTATGCTGTAGAACCGTTACTCGACGGCGATGGTCCGCTGGGCGATCTTTCTGTGCGTTTAAAACTCATTTACGGGTTGGGc                           <  2:631643/90‑1 (MQ=255)
                                                                cgGTGAAGTATGCTGTAGAACCGTTACTCGACGGCGATGGTCCGCTGGGCGATCTTTCTGTGCGTTTAAAACTCATTTACGGGTTGGGCg                          >  1:2342022/1‑90 (MQ=255)
                                                                  gTGAAGTATGCTGTAGAACCGTTACTCGACGGCGATGGTCCGCTGGGCGATCTTTCTGTGCGTTTAAAACt                                           >  2:591850/1‑71 (MQ=255)
                                                                  gTGAAGTATGCTGTAGAACCGTTACTCGACGGCGATGGTCCGCTGGGCGATCTTTCTGTGCGTTTAAAACt                                           <  1:591850/71‑1 (MQ=255)
                                                                  gTGAAGTATGCTGTAGAACCGTTACTCGACGGCGATGGTCCGCTGGGCGATCTTTCTGTGCGTTTAAAACTCATTTACGGGTTGGGCGTc                        >  2:2888540/1‑90 (MQ=255)
                                                                    gAAGTATGCTGTAGAACCGTTACTCGACGGCGATGGTCCGCTGGGCGATCTTTCTGTGCGTTTAAAACTCATTTACGGGTTGGGc                           >  1:2946084/1‑85 (MQ=255)
                                                                    gAAGTATGCTGTAGAACCGTTACTCGACGGCGATGGTCCGCTGGGCGATCTTTCTGTGCGTTTAAAACTCATTTACGGGTTGGGCGTCAt                      <  2:703293/90‑1 (MQ=255)
                                                                    gAAGTATGCTGTAGAACCGTTACTCGACGGCGATGGTCCGCTGGGCGATCTTTCTGTGCGTTTAAAACTCATTTACGGGTTGGGCGTCAt                      >  2:1085253/1‑90 (MQ=255)
                                                                    gAAGTATGCTGTAGAACCGTTACTCGACGGCGATGGTCCGCTGGGCGATCTTTCTGTGCGTTTAAAACTCATTTACGGGTTGGGCGTCAt                      >  1:334545/1‑90 (MQ=255)
                                                                       gTATGCTGTAGAACCGTTACTCGACGGCGATGGTCCGCTGGGCGATCTTTCTGTGCGTTTAAAACTCATTTACGGGTTGGGCGTCATTaa                   >  2:1210472/1‑90 (MQ=255)
                                                                       gTATGCTGTAGAACCGTTACTCGACGGCGATGGTCCGCTGGGCGATCTTTCTGTGCGTTTAAAACTCATTTACGGGTTGGGCGTCATTaa                   <  1:1509965/90‑1 (MQ=255)
                                                                       gTATGCTGTAGAACCGTTACTCGACGGCGATGGTCCGCTGGGCGATCTTTCTGTGCGTTTAAAACTCATTTACGGGTTGGGCGTCATTaa                   >  1:1533651/1‑90 (MQ=255)
                                                                       gTATGCTGTAGAACCGTTACTCGACGGCGATGGTCCGCTGGGCGATCTTTCTGTGCGTTTAAAACTCATTTACGGGTTGGGCGTCATTaa                   <  1:2062250/90‑1 (MQ=255)
                                                                         aTGCTGTAGAACCGTTACTCGACGGCGATGGTCCGCTGGGCGATCTTTCTGTGCGTTTAAAACTCATTTACGGGTTGGGCGTCATTAAcc                 <  1:2126278/90‑1 (MQ=255)
                                                                          tGCTGTAGAACCGTTACTCGACGGCGATGGTCCGCTGGGCGATCTTTCTGTGCGTTTAAAACTCATTTACGGGTTGGGCGTCATTAACCg                >  2:2504388/1‑90 (MQ=255)
                                                                           gCTGTAGAACCGTTCCTCGACGGCGATGGTCCGCTGGGCGATCTTTCTGTGCGTTTAAAACTCATTTACGGGTTGGGCGTCATTAACCGc               <  2:1533651/90‑1 (MQ=255)
                                                                            cTGTAGAACCGTTACTCGACGGCGATGGTCCGCTGGGc                                                                  >  1:818304/1‑38 (MQ=255)
                                                                            cTGTAGAACCGTTACTCGACGGCGATGGTCCGCTGGGCGATCTTTCTGTGCGTTTAAAACTCATTTACGGGTTGGGCGTCATTAACCGcc              >  1:1396221/1‑90 (MQ=255)
                                                                             tGTAGAACCGTTACTCGACGGCGATGGTCCGCTGGGCGATCTTTCTGTGCGTTTAAAACTCATTTACGGGTTGGGCGTCATTAACCGCCa             <  2:2239098/90‑1 (MQ=255)
                                                                              gTAGAACCGTTACTCGACGGCGATGGTCCGCTGGGCGATCTTTc                                                          >  2:1564304/1‑44 (MQ=255)
                                                                              gTAGAACCGTTACTCGACGGCGATGGTCCGCTGGGCGATCTTTCTGTGCGTTTAAAACTc                                          >  2:2317417/1‑60 (MQ=255)
                                                                              gTAGAACCGTTACTCGACGGCGATGGTCCGCTGGGCGATCTTTCTGTGCGTTTAAAACTc                                          <  1:2317417/60‑1 (MQ=255)
                                                                              gTAGAACCGTTACTCGACGGCGATGGTCCGCTGGGCGATCTTTCTGTGCGTTTAAAACTCATTTACGGGt                                <  2:2502808/70‑1 (MQ=255)
                                                                              gTAGAACCGTTACTCGACGGCGATGGTCCGCTGGGCGATCTTTCTGTGCGTTTAAAACTCATTTACGGGt                                >  1:2502808/1‑70 (MQ=255)
                                                                              gTAGAACCGTTACTCGACGGCGATGGTCCGCTGGGCGATCTTTCTGTGCGTTTAAAACTCATTTACGGGTTGGGCGTCATTAACCGCCAg            >  2:3016160/1‑90 (MQ=255)
                                                                              gTAGAACCGTTACTCGACGGCGATGGTCCGCTGGGCGATCTTTCTGTGCGTTTAAAACTCATTTACGGGTTGGGCGTCATTAACCGCCAg            >  2:375413/1‑90 (MQ=255)
                                                                              gTAGAACCGTTACTCGACGGCGATGGTCCGCTGGGCGATCTTTCTGTGCGTTTAAAACTCATTTACGGGTTGGGCGTCATTAACCGCCAg            >  1:1047835/1‑90 (MQ=255)
                                                                              gTAGAACCGTTACTCGACGGCGATGGTCCGCTGGGCGATCTTTCTGTGCGTTTAAAACTCATTTACGGGTTGGGCGTCATTAACCGCCAg            >  2:849703/1‑90 (MQ=255)
                                                                              gTAGAACCGTTACTCGACGGCGATGGTCCGCTGGGCGATCTTTCTGTGCGTTTAAAACTCATTTACGGGTTGGGCGTCATTAACCGCCAg            >  1:2527643/1‑90 (MQ=255)
                                                                              gTAGAACCGTTACTCGACGGCGATGGTCCGCTGGGCGATATTTCtgtg                                                      >  2:1217221/1‑48 (MQ=255)
                                                                               tAGAACCGTTACTCGACGGCGATGGTCCGCTGGGCGATCTTTCTGTGCGTTTAAAACTCATTTACGGGTTGGGCGTCATTAACCGCCAgg           <  2:1822486/90‑1 (MQ=255)
                                                                                 gAACCGTTACTCGACGGCGATGGTCCGCTGGGCGATc                                                              <  1:181383/37‑1 (MQ=255)
                                                                                 gAACCGTTACTCGACGGCGATGGTCCGCTGGGCGATCTTTCTGTGCGTTTAAAACTCATTTACGGGTTGGGCGTCATTAACCGCCAGGaa         >  2:514476/1‑90 (MQ=255)
                                                                                  aaCCGTTACTCGACGGCGATGGTCCGCTGGGCGATCTTTCTGTGCGTTTAAAACTCATTTACGGGTTGGGCGTCATTAACCGCCAGGAAt        <  2:1161393/90‑1 (MQ=255)
                                                                                   aCCGTTACTCGACGGCGATGGTCCGCTGGGCGATc                                                              <  1:2886333/35‑1 (MQ=255)
                                                                                   aCCGTTACTCGACGGCGATGGTCCGCTGGGCGATCTTTCTGTGCGTTTAAAAc                                            <  1:1094258/53‑1 (MQ=255)
                                                                                   aCCGTTACTCGACGGCGATGGTCCGCTGGGCGATCTTTCTGTGCGTTTAAAAc                                            >  2:1094258/1‑53 (MQ=255)
                                                                                   aCCGTTACTCGACGGCGATGGTCCGCTGGGCGATCTTTCTGTGCGTTTAAAACTCATTTACGGGTTg                              <  1:5518/67‑1 (MQ=255)
                                                                                   aCCGTTACTCGACGGCGATGGTCCGCTGGGCGATCTTTCTGTGCGTTTAAAACTCATTTACGGGTTg                              >  2:5518/1‑67 (MQ=255)
                                                                                      gTTACTCGACGGCGATGGTCCGCTGGGCGATCTTTCTGTGCGTTTAAAACTc                                          >  2:2873112/1‑52 (MQ=255)
                                                                                      gTTACTCGACGGCGATGGTCCGCTGGGCGATCTTTCTGTGCGTTTAAAACTc                                          <  1:2873112/52‑1 (MQ=255)
                                                                                      gTTACTCGACGGCGATGGTCCGCTGGGCGATCTTTCTGTGCGTTTAAAACTCATTTACGGGTTGGGCGTCATTAACCGCCAgg           >  1:1935500/1‑83 (MQ=255)
                                                                                      gTTACTCGACGGCGATGGTCCGCTGGGCGATCTTTCTGTGCGTTTAAAACTCATTTACGGGTTGGGCGTCATTAACCGCCAgg           <  2:1935500/83‑1 (MQ=255)
                                                                                      gTTACTCGACGGCGATGGTCCGCTGGGCGATCTTTCTGTGCGTTTAAAACTCATTTACGGGTTGGGCGTCATTAACCGCCAGGAATACGa    >  2:1615426/1‑90 (MQ=255)
                                                                                      gTTACTCGACGGCGATGGTCCGCTGGGCGATCTTTCTGTGCGTTTAAAACTCATTTACGGGTTGGGCGTCATTAACCGCCAGGAATACGa    >  2:392423/1‑90 (MQ=255)
                                                                                      gTTACTCGACGGCGATGGTCCGCTGGGCGATCTTTCTGTGCGTTTAAAACTCATTTACGGGTTGGGCGTCATTAACCGCCAGGAATACGa    >  2:1902137/1‑90 (MQ=255)
                                                                                      gTTACTCGACGGCGATGGTCCGCTGGGCGATCTTTCTGTGCGTTTAAAACTCATTTACGGGTTGGGCGTCATTAACCGCCAGGAATACGa    >  1:953884/1‑90 (MQ=255)
                                                                                      gTTACTCGACGGCGATGGTCCGCTGGGCGATCTTTCTGTGCGTTTAAAACTCATTTACGGGTTGGGCGTCATTAACCGCCAGGAATACGa    >  2:1204941/1‑90 (MQ=255)
                                                                                      gTTACTCGACGGCGATGGTCCGCTGGGCGATCTTTCTGTGCGTTTAAAACTCATTTACGGGTTGGGCGTCATTAACCGCCAGGAATACGa    >  2:665563/1‑90 (MQ=255)
                                                                                      gTTACTCGACGGCGATGGTCCGCTGGGCGATCTTTCTGTGCGTTTAAAACTCATTTACGGGTTGGGCGTCATTAACCGCCAGGAATACGa    >  1:2068078/1‑90 (MQ=255)
                                                                                      gTTACTCGACGGCGATGGTCCGCTGGGCGATCTTTCTGTGCGTTTAAAACTCATTTACGGGTTGGGCGTCATTAACCGCCAGGAATACGa    >  2:1847022/1‑90 (MQ=255)
                                                                                       ttACTCGACGGCGATGGTCCGCTGGGCGATCTTTCTGTGCGTTTAAAACTCATTTACGGGTTGGGCGTCATTAACCGCCAGGAATACGaa   <  2:1239282/90‑1 (MQ=255)
                                                                                        tACTCGACGGCGATGGTCCGCTGGGCGATCTTTCTGTGCGTTTAAAACTCATTTACGGGTTGGGCGGCATTAACCGCCAGGAATAGGAAg  >  2:1850139/1‑90 (MQ=255)
                                                                                         |                                                                                        
GTCGAGCTCCTGACCGAGGCGGTAAATCTTCTGGTGCTTCAGGTATTCCGCAAAGACGATTACGCGGTGAAGTATGCTGTAGAACCGTTACTCGACGGCGATGGTCCGCTGGGCGATCTTTCTGTGCGTTTAAAACTCATTTACGGGTTGGGCGTCATTAACCGCCAGGAATACGAAG  >  NZ_CP009273/3769079‑3769256

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: 
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.