Missing coverage evidence...
			seq id	start	end	size	←reads	reads→	gene	description
*	*	÷	NZ_CP009273	2006477	2006486	10	3 [1]	[1] 2	fliE	flagellar hook‑basal body complex protein FliE

GGCAAAACTAATGGTCGGTTGCGGCAGTGATTCCTGCGCACGCGCACTCATCGCCGTAGCCTGTAACTGGCTGATAACCCCTTCAATCCC  >  NZ_CP009273/2006391‑2006480                                                                                      |     ggCAAAACTAATGGTCGGTTGCGGCAGTGATTCCTGCGCACGCGCACTCATCGCCGTAGCCTGTAACTGGCTGATAACCCCTTCAATccc  >  2:259086/1‑90 (MQ=255)                                    gcgcacgcgcacTCATCGCCGTAGCCTGTAACTGGCTGATAACCCCTTCaa      >  1:63436/1‑51 (MQ=255)                                    gcgcacgcgcacTCATCGCCGTAGCCTGTAACTGGCTGATAACCCCTTCaa      <  2:63436/51‑1 (MQ=255)                                                                                      |     GGCAAAACTAATGGTCGGTTGCGGCAGTGATTCCTGCGCACGCGCACTCATCGCCGTAGCCTGTAACTGGCTGATAACCCCTTCAATCCC  >  NZ_CP009273/2006391‑2006480

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 23 ≤ ATCG/ATCG < 30 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑