Missing coverage evidence...
			seq id	start	end	size	←reads	reads→	gene	description
*	*	÷	NZ_CP009273	2006477	2006486	10	3 [1]	[1] 2	fliE	flagellar hook‑basal body complex protein FliE

GTATCGCTGACATTCTCGTCTCCCGGATAATTTCTGGTAGCAAAGCCTACCAGTAAGTCAATAAGACAAAGGCGCTAAATAGCAACAAAAAAAC  >  NZ_CP009273/2006483‑2006576     |                                                                                          gTATCGCTGACATTCTCGTCTCCCGGATAATTTCTGGTAGCAAAGCCTACCAGTAAGTCAATAAGACAAAGGCGCTAAATAGCAACaaaa      >  2:270442/1‑90 (MQ=255)     cGCTGACATTCTCGTCTCCCGGATAATTTCTGGTAGCAAAGCCTACCAGTAAGTCAATAAGACAAAGGCGCTAAATAGCAACAAAAAAAc  <  1:3762/90‑1 (MQ=255)     |                                                                                          GTATCGCTGACATTCTCGTCTCCCGGATAATTTCTGGTAGCAAAGCCTACCAGTAAGTCAATAAGACAAAGGCGCTAAATAGCAACAAAAAAAC  >  NZ_CP009273/2006483‑2006576

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 10 ≤ ATCG/ATCG < 24 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑