| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NZ_CP009273 | = 3337074 | 53 (1.520) | 3 (0.090) | 3/164 | 2.6 | 5.4% | coding (336/558 nt) | lptA | lipopolysaccharide ABC transporter substrate‑binding protein LptA |
| ? | NZ_CP009273 | 3337087 = | 53 (1.550) | coding (349/558 nt) | lptA | lipopolysaccharide ABC transporter substrate‑binding protein LptA | |||||
| Rejected: Frequency below/above cutoff threshold. | |||||||||||
AAAGAAGTGATTGACGGCTACGGTAAACCGGCAACGTTCTACCAGATGCAGGACAACGGTAAACCCGTTGAAGGTCACGCTTCCCAGA‑‑‑‑‑TGCACTACGAACTGGCAAAAGATTTTGTCGTTCTGACGGGTAATGCTTATCTGCAGCAGGTCGATAGCAACATTAAGGGCGATAAGATCAC > NZ_CP009273/3336985‑3337163 | aaaGAAGTGATTGACGGCTACGGTAAACCGGCAACGTTCTACCAGATGCAGGACAACGGTAAACCCGTTGAAGGTCACGCTTCCCAGA‑‑‑‑‑TG < 2:356150‑M1/90‑1 (MQ=255) aagaagTGATTGACGGCTACGGTAAACCGGCAACGTTCTACCAGAGGCAGGACAACGGTAAACCCGATGAAGGTCACGCTTCCCAGA‑‑‑‑‑TGc > 1:600703/1‑90 (MQ=255) gTGATTGACGGCTACGGTAAACCGGCAACGTTCTACCAGATGCAGGACAACGGTAAACCCGTTGAAGGTCACGCTTCCCAGA‑‑‑‑‑TGCACTAc > 1:658192/1‑90 (MQ=255) gATTGACGGCTACGGTAAACCGGCAACGTTCTACCAGATGCAGGACAACGGTAAACCCGTTGAAGGTCACGCTTCCCAGA‑‑‑‑‑TGCACTACGa > 1:363263/1‑90 (MQ=255) gATTGACGGCTACGGTAAACCGGCAACGTTCTACCAGATGCAGGACAACGGTAAACCCGTTGAAGGTCACGCTTCCCAGA‑‑‑‑‑TGCACTACGa > 1:780458/1‑90 (MQ=255) gATTGACGGCTACGGTAAACCGGCAACGTTCTACCAGATGCAGGACAACGGTAAACCCGTTGAAGGTCACGCTTCCCAGA‑‑‑‑‑TGCACTACGa > 2:797033/1‑90 (MQ=255) aCGGCTACGGTAAACCGGCAACGTTCTACCAGATGCAGGACAACGGTAAACCCGTTGAAGGTCACGCTTCCCAGA‑‑‑‑‑TGCa < 2:638034/79‑1 (MQ=255) aCGGCTACGGTAAACCGGCAACGTTCTACCAGATGCAGGACAACGGTAAACCCGTTGAAGGTCACGCTTCCCAGA‑‑‑‑‑TGCa > 1:638034/1‑79 (MQ=255) aCGGTAAACCGGCAACGTTCTACCAGATGCAGGACAACGGTAAACCCGTTGAAGGTCACGCTTCCCAGA‑‑‑‑‑TGCACTACGAACTGGCAAAAg > 2:593790/1‑90 (MQ=255) gTAAACCGGCAACGTTCTACCAGATGCAGGACAACGGTAAACCCGTTGAAGGTCACGCTTCCCAGA‑‑‑‑‑TGCACTACGAACTGGCAAAAGAtt > 1:243490/1‑90 (MQ=255) aaCCGGCAACGTTCTACCAGATGCAGGACAACGGTAAACCCGTTGAAGGTCACGCTTCCCAGA‑‑‑‑‑TGCACTACGAACTGGCAAAAGATTTTg > 2:934991/1‑90 (MQ=255) ggCAACGTTCTACCAGATGCAGGACAACGGTAAACCCGTTGAAGGTCACGCTTCCCAGA‑‑‑‑‑TGCACTACGAACTGGCAAAAGATTTTGTCGt > 1:446860/1‑90 (MQ=255) cAACGTTCTACCAGATGCAGGACAACGGTAAACCCGTTGAAGGTCACGCTTCCCAGA‑‑‑‑‑TGCACTACGAACTGGCAAAAGATTTTGTCGTTc < 2:564245/90‑1 (MQ=255) aaCGTTCTACCAGATGCAGGACAACGGTAAACCCGTTGAAGGTCACGCTTCCCAGA‑‑‑‑‑TGCACTACGAACTGGCAAAAGATTTTGTCGTTCt > 2:332156/1‑90 (MQ=255) cGTTCTACCAGATGCAGGACAACGGTAAACCCGTTGAAGGTCACGCTTCCCAGA‑‑‑‑‑TGCACTACGAACTGGCAAAAGATTTTGTCGTTCTGa < 2:363263/90‑1 (MQ=255) tACCAGATGCAGGACAACGGTAAACCCGTTGAAGGTCACGCTTCCCAGA‑‑‑‑‑TGCACTACGAACTGGCAAAAGATTTTGTCGTTCTGACGGGt < 1:797033/90‑1 (MQ=255) gATGCAGGACAACGGTAAACCCGTTGAAGGTCACGCTTCCCAGA‑‑‑‑‑TGCACTACGAACTGGCAAAAGATTTTGTCGTTCTGACGGGTAATGc > 1:679833/1‑90 (MQ=255) gATGCAGGACAACGGTAAACCCGTTGAAGGTCACGCTTCCCAGA‑‑‑‑‑TGCACTACGAACTGGCAAAAGATTTTGTCGTTCTGACGGGTAATGc > 2:651494/1‑90 (MQ=255) aTGCAGGACAACGGTAAACCCGTTGAAGGTCACGCTTCCCAGA‑‑‑‑‑TGgcaaaagattttgtcgttctgacgggtaatgcttatctgcagcag > 1:568434‑M1/1‑45 (MQ=255) aTGCAGGACAACGGTAAACCCGTTGAAGGTCACGCTTCCCAGA‑‑‑‑‑TGCACTACGAACTGGCAAAAGATTTTGTCGTTCTGACGGGTAATGCt > 1:573525/1‑90 (MQ=255) cAGGACAACGGTAAACCCGTTGAAGGTCACGCTTCCCAGA‑‑‑‑‑TGCACTACGAACTGGCAAAAGATTTTGTCGTTCTGACGGGTAATGCTTAt > 1:566393/1‑90 (MQ=255) ggACAACGGTAAACCCGTTGAAGGTCACGCTTCCCAGATGCACTGgcaaaagattttgtcgttctgacgggtaatgcttatctgcagcag > 2:411899‑M1/1‑45 (MQ=255) aCGGTAAACCCGTTGAAGGTCACGCTTCCCAGA‑‑‑‑‑TGgcaaaagattttgtcgttctgacgggtaatgcttatctgcagcaggtcgatagca < 2:568434‑M1/90‑56 (MQ=255) aCGGTAAACCCGTTGAAGGTCACGCTTCCCAGA‑‑‑‑‑TGCACTACGAACTGGCAAAAGATTTTGTCGTTCTGa > 1:705978/1‑69 (MQ=255) aCGGTAAACCCGTTGAAGGTCACGCTTCCCAGA‑‑‑‑‑TGCACTACGAACTGGCAAAAGATTTTGTCGTTCTGa < 2:705978/69‑1 (MQ=255) aCGGTAAACCCGTTGAAGGTCACGCTTCCCAGA‑‑‑‑‑TGCACTACGAACTGGCAAAAGATTTTGTCGTTCTGACGGGt > 1:350201/1‑74 (MQ=255) aCGGTAAACCCGTTGAAGGTCACGCTTCCCAGA‑‑‑‑‑TGCACTACGAACTGGCAAAAGATTTTGTCGTTCTGACGGGt < 2:350201/74‑1 (MQ=255) aCGGTAAACCCGTTGAAGGTCACGCTTCCCAGA‑‑‑‑‑TGCACTACGAACTGGCAAAAGATTTTGTCGTTCTGACGGGTAATGCTTATCTgcagc > 1:853086/1‑90 (MQ=255) aCGGTAAACCCGTTGAAGGTCACGCTTCCCAGA‑‑‑‑‑TGCACTACGAACTGGCAAAAGATTTTGTCGTTCTGACGGGTAATGCTTATCTgcagc > 2:884668/1‑90 (MQ=255) aCGGTAAACCCGTTGAAGGTCACGCTTCCCAGA‑‑‑‑‑TGCACTACGAACTGGCAAAAGATTTTGTCGGTCTGCCGGGTAATGCTTATCTgcagc > 1:185532/1‑90 (MQ=255) aCGGTAAACCCGTTGAAGGTCACGCTTCCCAGA‑‑‑‑‑TGCACTACGAACTAGCAAAAGATTTTGTCGTTCTGACGGGTAATGCTTATCTgcagc > 1:854622/1‑90 (MQ=255) cGGTAAACCCGTTGAAGGTCACGCTTCCCAGA‑‑‑‑‑TGCACTACGAACTGGCAAAAGATTTTGTCGTTCTGACGGGTAATGCTTATCTgcagca < 2:312285/90‑1 (MQ=255) cGGTAAACCCGTTGAAGGTCACGCTTCCCAGA‑‑‑‑‑TGCACTACGAACTGGCAAAAGATTTTGTCGTTCTGACGGGTAATGCTTATCTgcagca < 2:256751/90‑1 (MQ=255) aaaCCCGTTGAAGGTCACGCTTCCCAGA‑‑‑‑‑TGCACTACGAACTGGCAAAAGATTTTGTCGTTCTGACGGGTAATGCTTATCTGCAGCAGGTc > 2:349610/1‑90 (MQ=255) aaaCCCGTTGAAGGTCACGCTTCCCAGA‑‑‑‑‑TGCACTACGAACTGGCAAAAGATTTTGTCGTTCTGACGGGTAATGCTTATCTGCAGCAGGTc > 2:382542/1‑90 (MQ=255) cccGTTGAAGGTCACGCTTCCCAGA‑‑‑‑‑TGCACTACGAACTGGCAAAAGATTTTGTCGTTCTGACGGGTAATGCt > 2:848244/1‑72 (MQ=255) cccGTTGAAGGTCACGCTTCCCAGA‑‑‑‑‑TGCACTACGAACTGGCAAAAGATTTTGTCGTTCTGACGGGTAATGCt < 1:848244/72‑1 (MQ=255) cGTTGAAGGTCACGCTTCCCAGA‑‑‑‑‑TGCACTACGAACTGGCAAAAGATTTTGTCGTTCTGACGGGTAATGCTTATCTGCAGCAGGTCGATAg > 1:960521/1‑90 (MQ=255) gTTGAAGGTCACGCTTCCCAGA‑‑‑‑‑TGCACTACGAACTGGCAAAAGATTTTGTCGTTCTGACGGGt > 1:415207/1‑63 (MQ=255) gTTGAAGGTCACGCTTCCCAGA‑‑‑‑‑TGCACTACGAACTGGCAAAAGATTTTGTCGTTCTGACGGGt < 2:415207/63‑1 (MQ=255) gTTGAAGGTCACGCTTCCCAGA‑‑‑‑‑TGCACTACGAACTGGCAAAAGATTTTGTCGTTCTGACGGGTAATGCTTATCTGCAGCAGGTCGATAGc < 2:429648/90‑1 (MQ=255) gTTGAAGGTCACGCTTCCCAGA‑‑‑‑‑TGCACTACGAACTGGCAAAAGATTTTGTCGTTCTGACGGGTAATGCTTATCTGCAGCAGGTCGATAGc > 1:569816/1‑90 (MQ=255) gTTGAAGGTCACGCTTCCCAGA‑‑‑‑‑TGCACTACGAACTGGCAAAAGATTTTGTCGTTCTGACGGGTAATGCTTATCTGCAGCAGGTCGATAGc > 2:652292/1‑90 (MQ=255) ttGAAGGTCACGCTTCCCAGA‑‑‑‑‑TGCACTACGAACTGGCAAAAGATTTTGTCGTTCTGACGGGTAATGCTTATCTGCAGCAGGTCGATAGCa < 2:960521/90‑1 (MQ=255) ttGAAGGTCACGCTTCCCAGA‑‑‑‑‑TGCACTACGAACTGGCAAAAGATTTTGTCGTTCTGACGGGTAATGCTTATCTGCAGCAGGTCGATAGCa < 1:410304/90‑1 (MQ=255) ttGAAGGTCACGCTTCCCAGA‑‑‑‑‑TGCACTACGAACTGGCAAAAGATTTTGTCGTTCTGACGGGTAATGCTTATCTGCAGCAGGTCGATAGCa < 1:884668/90‑1 (MQ=255) ttGAAGGTCACGCTTCCCAGA‑‑‑‑‑TGCACTACGAACTGGCAAAAGATTTTGTCGTTCTGACGGGTAATGCTTATCTGCAGCAGGTCGATAGCa < 1:934991/90‑1 (MQ=255) ttGAAGGTCACGCTTCCCAGA‑‑‑‑‑TGCACTACGAACTGGCAAAAGATTTTGTCGTTCTGACGGGTAATGCTTATCTGCAGCAGGTCGATAGCa < 2:151129/90‑1 (MQ=255) ttGAAGGTCACGCTTCCCAGA‑‑‑‑‑TGCACTACGAACTGGCAAAAGATTTTGTCGTTCTGACGGGTAATGCTTATCTGCAGCAGGTCGATAGCa < 2:241970/90‑1 (MQ=255) gTCACGCTTCCCAGA‑‑‑‑‑TGCACTACGAACTGGCAAAAGATTTTGTCGTTCTGACGGGTAATGCTTATCTGCAGCAGGTCGATAGCAACATTa > 2:885237/1‑90 (MQ=255) aCGCTTCCCAGA‑‑‑‑‑TGCACTACGAACTGGCAAAAGATTTTGTCGTTCTGACGGGTAATGCTTATCTGCAGCAGGTCGATAGCAACATTAAgg > 2:384981/1‑90 (MQ=255) cTTCCCAGA‑‑‑‑‑TGCACTACGAACTGGCAAAAGATTTTGTCGTTCTGACGGGTAATGCTTATCTGCAGCAGGTCGATAGCAACATTAAGGGCg < 1:625726/90‑1 (MQ=255) cTTCCCAGA‑‑‑‑‑TGCACTACGAACTGGCAAAAGATTTTGTCGTTCTGACGGGTAATGCTTATCTGCAGCAGGTCGACAGCAACATTAAGGGCg < 2:446860/90‑1 (MQ=255) cAGA‑‑‑‑‑TGCACTACGAACTGGCAAAAGATTTTGTCGTTCTGACGGGTAATGCTTATCTGCAGCAGGTCGATAGCAACATTAAGGGCGATAAg < 2:600265/90‑1 (MQ=255) cAGA‑‑‑‑‑TGCACTACGAACTGGCAAAAGATTTTGTCGTTCTGACGGGTAATGCTTATCTGCAGCAGGTCGATAGCAACATTAAGGGCGATAAg < 2:882119/90‑1 (MQ=255) ggcaaaagattttgtcgttctgacgggtaatgcttatctgcagcaggtcgatagcaacattaagggcgataagatcacttacctggtgaa < 2:573525‑M1/90‑90 (MQ=255) gCACTACGAACTGGCAAAAGATTTTGTCGTTCTGACGGGTAATGCTTATCTGCAGCAGGTCGATAGCAACATTAAGGGCGATAAGATCAc > 1:968674/1‑90 (MQ=255) gCACTACGAACTGGCAAAAGATTTTGTCGTTCTGACGGGTAATGCTTATCTGCAGCAGGTCGATAGCAACATTAAGGGCGATAAGATCAc > 2:382939/1‑90 (MQ=255) | AAAGAAGTGATTGACGGCTACGGTAAACCGGCAACGTTCTACCAGATGCAGGACAACGGTAAACCCGTTGAAGGTCACGCTTCCCAGA‑‑‑‑‑TGCACTACGAACTGGCAAAAGATTTTGTCGTTCTGACGGGTAATGCTTATCTGCAGCAGGTCGATAGCAACATTAAGGGCGATAAGATCAC > NZ_CP009273/3336985‑3337163 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 28 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |