| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NZ_CP009273 | = 3337074 | 53 (1.520) | 3 (0.090) | 3/164 | 2.6 | 5.4% | coding (336/558 nt) | lptA | lipopolysaccharide ABC transporter substrate‑binding protein LptA |
| ? | NZ_CP009273 | 3337087 = | 53 (1.550) | coding (349/558 nt) | lptA | lipopolysaccharide ABC transporter substrate‑binding protein LptA | |||||
| Rejected: Frequency below/above cutoff threshold. | |||||||||||
ACGGTAAACCGGCAACGTTCTACCAGATGCAGGACAACGGTAAACCCGTTGAAGGTCACGCTTCCCAGATGCACTACGAACTGGCAAAAGATTTTGTCGTTCTGACGGGTAATGCTTATCTGCAGCAGGTCGATAGCAACATTAAGGGCGATAAGATCACTTACCTGGTGAAA > NZ_CP009273/3337004‑3337176 | aCGGTAAACCGGCAACGTTCTACCAGATGCAGGACAACGGTAAACCCGTTGAAGGTCACGCTTCCCAGATGCACTACGAACTGGCAAAAg > 2:593790/1‑90 (MQ=255) gTAAACCGGCAACGTTCTACCAGATGCAGGACAACGGTAAACCCGTTGAAGGTCACGCTTCCCAGATGCACTACGAACTGGCAAAAGAtt > 1:243490/1‑90 (MQ=255) aaCCGGCAACGTTCTACCAGATGCAGGACAACGGTAAACCCGTTGAAGGTCACGCTTCCCAGATGCACTACGAACTGGCAAAAGATTTTg > 2:934991/1‑90 (MQ=255) ggCAACGTTCTACCAGATGCAGGACAACGGTAAACCCGTTGAAGGTCACGCTTCCCAGATGCACTACGAACTGGCAAAAGATTTTGTCGt > 1:446860/1‑90 (MQ=255) cAACGTTCTACCAGATGCAGGACAACGGTAAACCCGTTGAAGGTCACGCTTCCCAGATGCACTACGAACTGGCAAAAGATTTTGTCGTTc < 2:564245/90‑1 (MQ=255) aaCGTTCTACCAGATGCAGGACAACGGTAAACCCGTTGAAGGTCACGCTTCCCAGATGCACTACGAACTGGCAAAAGATTTTGTCGTTCt > 2:332156/1‑90 (MQ=255) cGTTCTACCAGATGCAGGACAACGGTAAACCCGTTGAAGGTCACGCTTCCCAGATGCACTACGAACTGGCAAAAGATTTTGTCGTTCTGa < 2:363263/90‑1 (MQ=255) tACCAGATGCAGGACAACGGTAAACCCGTTGAAGGTCACGCTTCCCAGATGCACTACGAACTGGCAAAAGATTTTGTCGTTCTGACGGGt < 1:797033/90‑1 (MQ=255) gATGCAGGACAACGGTAAACCCGTTGAAGGTCACGCTTCCCAGATGCACTACGAACTGGCAAAAGATTTTGTCGTTCTGACGGGTAATGc > 2:651494/1‑90 (MQ=255) gATGCAGGACAACGGTAAACCCGTTGAAGGTCACGCTTCCCAGATGCACTACGAACTGGCAAAAGATTTTGTCGTTCTGACGGGTAATGc > 1:679833/1‑90 (MQ=255) aTGCAGGACAACGGTAAACCCGTTGAAGGTCACGCTTCCCAGATGCACTACGAACTGGCAAAAGATTTTGTCGTTCTGACGGGTAATGCt > 1:573525/1‑90 (MQ=255) cAGGACAACGGTAAACCCGTTGAAGGTCACGCTTCCCAGATGCACTACGAACTGGCAAAAGATTTTGTCGTTCTGACGGGTAATGCTTAt > 1:566393/1‑90 (MQ=255) aCGGTAAACCCGTTGAAGGTCACGCTTCCCAGATGCACTACGAACTGGCAAAAGATTTTGTCGTTCTGa < 2:705978/69‑1 (MQ=255) aCGGTAAACCCGTTGAAGGTCACGCTTCCCAGATGCACTACGAACTGGCAAAAGATTTTGTCGTTCTGa > 1:705978/1‑69 (MQ=255) aCGGTAAACCCGTTGAAGGTCACGCTTCCCAGATGCACTACGAACTGGCAAAAGATTTTGTCGTTCTGACGGGt > 1:350201/1‑74 (MQ=255) aCGGTAAACCCGTTGAAGGTCACGCTTCCCAGATGCACTACGAACTGGCAAAAGATTTTGTCGTTCTGACGGGt < 2:350201/74‑1 (MQ=255) aCGGTAAACCCGTTGAAGGTCACGCTTCCCAGATGCACTACGAACTGGCAAAAGATTTTGTCGTTCTGACGGGTAATGCTTATCTgcagc > 2:884668/1‑90 (MQ=255) aCGGTAAACCCGTTGAAGGTCACGCTTCCCAGATGCACTACGAACTGGCAAAAGATTTTGTCGTTCTGACGGGTAATGCTTATCTgcagc > 1:853086/1‑90 (MQ=255) aCGGTAAACCCGTTGAAGGTCACGCTTCCCAGATGCACTACGAACTGGCAAAAGATTTTGTCGGTCTGCCGGGTAATGCTTATCTgcagc > 1:185532/1‑90 (MQ=255) aCGGTAAACCCGTTGAAGGTCACGCTTCCCAGATGCACTACGAACTAGCAAAAGATTTTGTCGTTCTGACGGGTAATGCTTATCTgcagc > 1:854622/1‑90 (MQ=255) cGGTAAACCCGTTGAAGGTCACGCTTCCCAGATGCACTACGAACTGGCAAAAGATTTTGTCGTTCTGACGGGTAATGCTTATCTgcagca < 2:312285/90‑1 (MQ=255) cGGTAAACCCGTTGAAGGTCACGCTTCCCAGATGCACTACGAACTGGCAAAAGATTTTGTCGTTCTGACGGGTAATGCTTATCTgcagca < 2:256751/90‑1 (MQ=255) ggacaacggtaaacccgttgaaggtcacgcttcccagatgcactgGCAAAAGATTTTGTCGTTCTGACGGGTAATGCTTATCTGcagcag > 2:411899‑M2/46‑90 (MQ=255) atgcaggacaacggtaaacccgttgaaggtcacgcttcccagatgGCAAAAGATTTTGTCGTTCTGACGGGTAATGCTTATCTGcagcag > 1:568434‑M2/46‑90 (MQ=255) aaaCCCGTTGAAGGTCACGCTTCCCAGATGCACTACGAACTGGCAAAAGATTTTGTCGTTCTGACGGGTAATGCTTATCTGCAGCAGGTc > 2:349610/1‑90 (MQ=255) aaaCCCGTTGAAGGTCACGCTTCCCAGATGCACTACGAACTGGCAAAAGATTTTGTCGTTCTGACGGGTAATGCTTATCTGCAGCAGGTc > 2:382542/1‑90 (MQ=255) cccGTTGAAGGTCACGCTTCCCAGATGCACTACGAACTGGCAAAAGATTTTGTCGTTCTGACGGGTAATGCt > 2:848244/1‑72 (MQ=255) cccGTTGAAGGTCACGCTTCCCAGATGCACTACGAACTGGCAAAAGATTTTGTCGTTCTGACGGGTAATGCt < 1:848244/72‑1 (MQ=255) cGTTGAAGGTCACGCTTCCCAGATGCACTACGAACTGGCAAAAGATTTTGTCGTTCTGACGGGTAATGCTTATCTGCAGCAGGTCGATAg > 1:960521/1‑90 (MQ=255) gTTGAAGGTCACGCTTCCCAGATGCACTACGAACTGGCAAAAGATTTTGTCGTTCTGACGGGt > 1:415207/1‑63 (MQ=255) gTTGAAGGTCACGCTTCCCAGATGCACTACGAACTGGCAAAAGATTTTGTCGTTCTGACGGGt < 2:415207/63‑1 (MQ=255) gTTGAAGGTCACGCTTCCCAGATGCACTACGAACTGGCAAAAGATTTTGTCGTTCTGACGGGTAATGCTTATCTGCAGCAGGTCGATAGc > 2:652292/1‑90 (MQ=255) gTTGAAGGTCACGCTTCCCAGATGCACTACGAACTGGCAAAAGATTTTGTCGTTCTGACGGGTAATGCTTATCTGCAGCAGGTCGATAGc < 2:429648/90‑1 (MQ=255) gTTGAAGGTCACGCTTCCCAGATGCACTACGAACTGGCAAAAGATTTTGTCGTTCTGACGGGTAATGCTTATCTGCAGCAGGTCGATAGc > 1:569816/1‑90 (MQ=255) ttGAAGGTCACGCTTCCCAGATGCACTACGAACTGGCAAAAGATTTTGTCGTTCTGACGGGTAATGCTTATCTGCAGCAGGTCGATAGCa < 2:960521/90‑1 (MQ=255) ttGAAGGTCACGCTTCCCAGATGCACTACGAACTGGCAAAAGATTTTGTCGTTCTGACGGGTAATGCTTATCTGCAGCAGGTCGATAGCa < 1:934991/90‑1 (MQ=255) ttGAAGGTCACGCTTCCCAGATGCACTACGAACTGGCAAAAGATTTTGTCGTTCTGACGGGTAATGCTTATCTGCAGCAGGTCGATAGCa < 1:410304/90‑1 (MQ=255) ttGAAGGTCACGCTTCCCAGATGCACTACGAACTGGCAAAAGATTTTGTCGTTCTGACGGGTAATGCTTATCTGCAGCAGGTCGATAGCa < 2:151129/90‑1 (MQ=255) ttGAAGGTCACGCTTCCCAGATGCACTACGAACTGGCAAAAGATTTTGTCGTTCTGACGGGTAATGCTTATCTGCAGCAGGTCGATAGCa < 2:241970/90‑1 (MQ=255) ttGAAGGTCACGCTTCCCAGATGCACTACGAACTGGCAAAAGATTTTGTCGTTCTGACGGGTAATGCTTATCTGCAGCAGGTCGATAGCa < 1:884668/90‑1 (MQ=255) acggtaaacccgttgaaggtcacgcttcccagatgGCAAAAGATTTTGTCGTTCTGACGGGTAATGCTTATCTGCAGCAGGTCGATAGCa < 2:568434‑M2/55‑1 (MQ=255) gTCACGCTTCCCAGATGCACTACGAACTGGCAAAAGATTTTGTCGTTCTGACGGGTAATGCTTATCTGCAGCAGGTCGATAGCAACATTa > 2:885237/1‑90 (MQ=255) aCGCTTCCCAGATGCACTACGAACTGGCAAAAGATTTTGTCGTTCTGACGGGTAATGCTTATCTGCAGCAGGTCGATAGCAACATTAAgg > 2:384981/1‑90 (MQ=255) cTTCCCAGATGCACTACGAACTGGCAAAAGATTTTGTCGTTCTGACGGGTAATGCTTATCTGCAGCAGGTCGATAGCAACATTAAGGGCg < 1:625726/90‑1 (MQ=255) cTTCCCAGATGCACTACGAACTGGCAAAAGATTTTGTCGTTCTGACGGGTAATGCTTATCTGCAGCAGGTCGACAGCAACATTAAGGGCg < 2:446860/90‑1 (MQ=255) cAGATGCACTACGAACTGGCAAAAGATTTTGTCGTTCTGACGGGTAATGCTTATCTGCAGCAGGTCGATAGCAACATTAAGGGCGATAAg < 2:882119/90‑1 (MQ=255) cAGATGCACTACGAACTGGCAAAAGATTTTGTCGTTCTGACGGGTAATGCTTATCTGCAGCAGGTCGATAGCAACATTAAGGGCGATAAg < 2:600265/90‑1 (MQ=255) gCACTACGAACTGGCAAAAGATTTTGTCGTTCTGACGGGTAATGCTTATCTGCAGCAGGTCGATAGCAACATTAAGGGCGATAAGATCAc > 2:382939/1‑90 (MQ=255) gCACTACGAACTGGCAAAAGATTTTGTCGTTCTGACGGGTAATGCTTATCTGCAGCAGGTCGATAGCAACATTAAGGGCGATAAGATCAc > 1:968674/1‑90 (MQ=255) aCTACGAACTGGCAAAAGATTTTGTCGTTCTGACGGGTAATGCTTATCTGCAGCAGGTCGATAGCAACATTAAGGGCGATAAGATCACtt > 1:53235/1‑90 (MQ=255) aCTACGAACTGGCAAAAGATTTTGTCGTTCTGACGGGTAATGCTTATCTGCAGCAGGTCGATAGCAACATTAAGGGCGATAAGATCACtt > 1:259791/1‑90 (MQ=255) aCTACGAACTGGCAAAAGATTTTGTCGTTCTGACGGGTAATGCTTATCTGCAGCAGGTCGATAGCAACATTAAGGGCGATAAGATCACtt > 2:957/1‑90 (MQ=255) aCTACGAACTGGCAAAAGATTTTGTCGTTCTGACGGGTAATGCTTATCTGCAGCAGGTCGATAGCAACATTAAGGGCGATAAGATCACtt > 2:499229/1‑90 (MQ=255) cTACGAACTGGCAAAAGATTTTGTCGTTCTGACGGGTAATGCTTATCTGCAGCAGGTCGATAGCAACATTAAGGGCGATAAGATCACTTa > 1:499174/1‑90 (MQ=255) cTACGAACTGGCAAAAGATTTTGTCGTTCTGACGGGTAATGCTTATCTGCAGCAGGTCGATAGCAACATTAAGGGCGATAAGATCACTTa > 1:310848/1‑90 (MQ=255) cGAACTGGCAAAAGATTTTGTCGTTCTGACGGGTAATGCTTATCTGCAGCAGGTCGATAGCAACATTAAGGGCGATAAGATCACTTACCt < 2:920168/90‑1 (MQ=255) gGCAAAAGATTTTGTCGTTCTGACGGGTAATGCTTATCTGCAGCAGGTCGATAGCAACATTAAGGGCGATAAGATCACTTACCTGGTGaa < 2:573525‑M2/89‑1 (MQ=255) gCAAAAGATTTTGTCGTTCTGACGGGTAATGCTTATCTGCAGCAGGTCGATAGCAACATTAAGGGCGATAAGATCACTTACCTGGTGaaa > 2:309654/1‑90 (MQ=255) | ACGGTAAACCGGCAACGTTCTACCAGATGCAGGACAACGGTAAACCCGTTGAAGGTCACGCTTCCCAGATGCACTACGAACTGGCAAAAGATTTTGTCGTTCTGACGGGTAATGCTTATCTGCAGCAGGTCGATAGCAACATTAAGGGCGATAAGATCACTTACCTGGTGAAA > NZ_CP009273/3337004‑3337176 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 30 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |