| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NZ_CP009273 | 3610600 = | 98 (1.520) | 4 (0.070) | 4/150 | 3.2 | 4.5% | coding (226/765 nt) | nikD | nickel import ATP‑binding protein NikD |
| ? | NZ_CP009273 | 3610644 = | 81 (1.390) | coding (270/765 nt) | nikD | nickel import ATP‑binding protein NikD | |||||
| Rejected: Coverage evenness skew score above cutoff. | |||||||||||
| Rejected: Frequency below/above cutoff threshold. | |||||||||||
CCAGGCAGGTTTCCCGCGCGTGGGTGTGCATGGTGTGCAGTGGATTAAAGGCGCTGCGCGGGTTCTGCATGATGGTGGCAATTTTGATGCCGCGCAG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NZ_CP009273/3610696‑3610600‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ccgcgcagCGCCTTTAATCCACTGCACACCATGCACACCCACGCGCGGGAAACCTGCCTGGCGTTAGGGAAACCCGCCGATGACGCTACGCTTACCG > NZ_CP009273/3610644‑3610732 CCAGGCAGGTTTCCCGCGCGTGGGTGTGCATGGTGTGCAGTGGATTAAAGGCGCTGCGCGGGTTCTGCATGATGGTGGCAATTTTGATGC < 1:1741093/90‑1 AGGCAGGTTTCCCGCGCGTGGGTGTGCATGGTGTGCAGTGGATTAAAGGCGCTGCGCGGGTTCTGCATGATGGTGGCAATTTTGATGCCG > 1:1016232/1‑90 AGGCAGGTTTCCCGCGCGTGGGTGTGCATGGTGTGCAGTGGATTAAAGGCGCTGCGCGGGTTCTGCATGATGGTGGCAATTTTGATGCCG > 2:914683/1‑90 AGGCAGGTTTCCCGCGCGTGGGTGTGCATGGTGTGCAGTGGATTAAAGGCGCTGCGCGGGTTCTGCATGATGGTGGCAATTTTGATGCCG > 1:1367506/1‑90 AGGCAGGTTTCCCGCGCGTGGGTGTGCATGGTGTGCAGTGGATTAAAGGCGCTGCGCGGGTTCTGCATGATGGTGGCAATTTTGATGCCG > 2:653959/1‑90 AGGCAGGTTTCCCGCGCGTGGGTGTGCATGGTGTGCAGTGGATTAAAGGCGCTGCGCGGGTTCTGCATGATGGTGGCAATTTTGATGCCG > 2:1084399/1‑90 AGGCAGGTTTCCCGCGCGTGGGTGTGCATGGTGTGCAGTGGATTAAAGGCGCTGCGCGGGTTCTGCATGATGGTGGCAATTTTGATGCCG > 1:179075/1‑90 AGGCAGGTTTCCCGCGCGTGGGTGTGCATGGTGTGCAGTGGATTAAAGGCGCTGCGCGGGTTCTGCATGATGGTGGCAATTTTGATGCCG > 1:1885836/1‑90 AGGCAGGTTTCCCGCGCGTGGGTGTGCATGGTGTGCAGTGGATTAAAGGCGCTGCGCGGGTTCTGCATGATGGTGGCAATTTTGATGCCG > 1:206067/1‑90 AGGTTTCCCGCGCGTGGGTGTGCATGGTGTGCAGTGGATTAAAGGCGCTGCGCGGGTTCTGCATGATGGTGGCAATTTTGATGCCGCGCA < 1:1084399/90‑1 AGGTTTCCCGCGCGTGGGTGTGCATGGTGTGCAGTGGATTAAAGGCGCTGCGCGGGTTCTGCATGATGGTGGCAATTTTGATGCCGCGCA < 1:15982/90‑1 GTTTCCCGCGCGTGGGTGTGCATGGTGTGCAGTGGATTAAAGGCGCTGCGCGGGTTCTGCATGATGGTGGCAATTTTGATGCCGCGCAGC < 2:1044378/90‑1 CGTGGGTGTGCATGGTGTGCAGTGGATTAAAGGCGCTGCGCGGGTTCTGCATGATGGTGGCAATTTTGATGCCGCGCAGCGCCTTTAATC < 1:1176760/90‑1 GTGCATGGTGTGCAGTGGATTAAAGGCGCTGCGCGGGTTCTGCCTGATGGTGGCAATTTTGATGCCGCGCAGCGCCTTTAATCCACTGCA < 2:1339152/90‑1 CATGGTGTGCAGTGGATTAAAGGCGCTGCGCGGGTTCTGCATGATGGTGGCAATTTTGATGCCGCGCAGCGCCTTTAATCCACTGCACAC < 2:573939/90‑1 GTGTGCAGTGGATTAAAGGCGCTGCGCGGGTTCTGCATGATGGTGGCAATTTTGATGCCGCGCAG > 1:1617154/1‑65 GTGTGCAGTGGATTAAAGGCGCTGCGCGGGTTCTGCATGATGGTGGCAATTTTGATGCCGCGCAG < 2:1617154/65‑1 GCGCAGCGCCTTTAATCCACTGCACACCATGCACACCCACGCGCGGGAAACCTGCCTGGCGTTAGGGAAACCCGCCGATGACGCTACGCT > 1:346436/1‑90 GCGCAGCGCCTTTAATCCACTGCACACCATGCACACCCACGCGCGGGAAACCTGCCTGGCGTTAGGGAAACCCGCCGATGACGCTACGCT > 2:1043857/1‑90 GCGCAGCGCCTTTAATCCACTGCACACCATGCACACCCACGCGCGGGAAACCTGCCTGGCGTTAGGGAAACCCGCCGATGACGCTACGCT > 2:1061156/1‑90 GCGCCTTTAATCCACTGCACACCATGCACACCCACGCGCGGGAAACCTGCCTGGCGTTAGGGAAACCCGCCGATGACGCTACGCTTACCG > 2:1901987/1‑90 CCAGGCAGGTTTCCCGCGCGTGGGTGTGCATGGTGTGCAGTGGATTAAAGGCGCTGCGCGGGTTCTGCATGATGGTGGCAATTTTGATGCCGCGCAG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NZ_CP009273/3610696‑3610600‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ccgcgcagCGCCTTTAATCCACTGCACACCATGCACACCCACGCGCGGGAAACCTGCCTGGCGTTAGGGAAACCCGCCGATGACGCTACGCTTACCG > NZ_CP009273/3610644‑3610732 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 29 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |