| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NZ_CP009273 | 3610600 = | 98 (1.520) | 4 (0.070) | 4/150 | 3.2 | 4.5% | coding (226/765 nt) | nikD | nickel import ATP‑binding protein NikD |
| ? | NZ_CP009273 | 3610644 = | 81 (1.390) | coding (270/765 nt) | nikD | nickel import ATP‑binding protein NikD | |||||
| Rejected: Coverage evenness skew score above cutoff. | |||||||||||
| Rejected: Frequency below/above cutoff threshold. | |||||||||||
GCGGGGGAAATTTTAGCCGATGGCAAACCGGTTTCGCCTTGCGCCCTGCGCGGCATCAAAATTGCCACCATCATGCAGAACCCGCGCAGCGCCTTTAATCCACTGCACACCATGCACACCCACGCGCGGGAAACCTGCCTGGCGTTAGGGAAACCCGCCGATGACGCTACGCTTACCG > NZ_CP009273/3610555‑3610732 | gcggGGGAAATTTTAGCCGATGGCAAACCGGTTTCGCCTTGCGTCCTGCGCGGCATCAAAATTGCCACCATCATGCAGAACCCGCGCAgc < 1:503296/90‑1 (MQ=255)gcggGGGAAATTTTAGCCGATGGCAAACCGGTTTCGCCTTGCGCCCTGCGCGGCATCAAAATTGCCACCATCATGCAGAACCCGCGCAgc < 1:1085886/90‑1 (MQ=255)gcggGGGAAATTTTAGCCGATGGCAAACCGGTTTCGCCTTGCGCCCTGCGCGGCATCAAAATTGCCACCATCATGCAGAACCCGCGCAgc < 1:1779366/90‑1 (MQ=255)gcggGGGAAATTTTAGCCGATGGCAAACCGGTTTCGCCTTGCGCCCTGCGCGGCATCAAAATTGCCACCATCATGCAGAACCCGCGCAgc < 2:118708/90‑1 (MQ=255) cggGGGAAATTTTAGCCGATGGCAAACCGGTTTCGCCTTGCGCCCTGCGCGGCATCAAAATTGCCACCATCATGCAGAACCCGCGCAgcg < 2:993016/90‑1 (MQ=255) cggGGGAAATTTTAGCCGATGGCAAACCGGTTTCGCCTTGCGCCCTGCGCGGCATCAAAATTGCCACCATCATGCAGAACCCGCGCAgcg < 1:1601475/90‑1 (MQ=255) cggGGGAAATTTTAGCCGATGGCAAACCGGTTTCGCCTTGCGCCCTGCGCGGCATCAAAATTGCCACCATCATGCAGAACCCGCGCAgcg < 1:1653345/90‑1 (MQ=255) cggGGGAAATTTTAGCCGATGGCAAACCGGTTTCGCCTTGCGCCCTGCGCGGCATCAAAATTGCCACCATCATGCAGAACCCGCGCAgcg < 1:1745919/90‑1 (MQ=255) cggGGGAAATTTTAGCCGATGGCAAACCGGTTTCGCCTTGCGCCCTGCGCGGCATCAAAATTGCCACCATCATGCAGAACCCGCGCAgcg < 2:1838978/90‑1 (MQ=255) cggGGGAAATTTTAGCCGATGGCAAACCGGTTTCGCCTTGCGCCCTGCGCGGCATCAAAATTGCCACCATCATGCAGAACCCGCGCAgcg < 2:443004/90‑1 (MQ=255) cggGGGAAATTTTAGCCGATGGCAAACCGGTTTCGCCTTGCGCCCTGCGCGGCATCAAAATTGCCACCATCATGCAGAACCCGCGCAgcg < 2:596886/90‑1 (MQ=255) cggGGGAAATTTTAGCCGATGGCAAACCGGTTTCGCCTTGCGCCCTGCGCGGCATCAAAATTGCCACCATCATGCAGAACCCGCGCAgcg > 2:802441/1‑90 (MQ=255) gAAATTTTAGCCGATGGCAAACCGGTTTCGCCTTGCGCCCTGCGCGGCATCAAAATTGCCACCATCATGCAGAACCCGCGCAGCGCCttt < 2:1661825/90‑1 (MQ=255) gAAATTTTAGCCGATGGCAAACCGGTTTCGCCTTGCGCCCTGCGCGGCATCAAAATTGCCACCATCATGCAGAACCCGCGCAGCGCCttt < 2:276182/90‑1 (MQ=255) aaTTTTAGCCGATGGCAAACCGGTTTCGCCTTGCGCCCTGCGCGGCATCAAAATTGCCACCATCATGCAGAACCCGCGCAGCGCCTTTaa < 2:1549248/90‑1 (MQ=255) aaTTTTAGCCGATGGCAAACCGGTTTCGCCTTGCGCCCTGCGCGGCATCAAAATTGCCACCATCATGCAGAACCCGCGCAGCGCCTTTaa < 1:42691/90‑1 (MQ=255) aaTTTTAGCCGATGGCAAACCGGTTTCGCCTTGCGCCCTGCGCGGCATCAAAATTGCCACCATCATGCAGAACCCGCGCAGCGCCTTTaa < 1:672604/90‑1 (MQ=255) ttttAGCCGATGGCAAACCGGTTTCGCCTTGCGCCCTGCGCGGCATCAAAATTGCCACCATCATGCAGAACCCGCGCAGCGCCTTTAATc < 1:872834/90‑1 (MQ=255) ttttAGCCGATGGCAAACCGGTTTCGCCTTGCGCCCTGCGCGGCATCAAAATTGCCACCATCATGCAGAACCCGCGCAGCGCCTTTAATc < 1:779462/90‑1 (MQ=255) ttttAGCCGATGGCAAACCGGTTTCGCCTTGCGCCCTGCGCGGCATCAAAATTGCCACCATCATGCAGAACCCGCGCAGCGCCTTTAATc < 2:1481076/90‑1 (MQ=255) ttttAGCCGATGGCAAACCGGTTTCGCCTTGCGCCCTGCGCGGCATCAAAATTGCCACCATCATGCAGAACCCGCGCAGCGCCTTTAATc < 1:1444625/90‑1 (MQ=255) ttttAGCCGATGGCAAACCGGTTTCGCCTTGCGCCCTGCGCGGCATCAAAATTGCCACCATCATGCAGAACCCGCGCAGCGCCTTTAATc < 1:718314/90‑1 (MQ=255) ttttAGCCGATGGCAAACCGGTTTCGCCTTGCGCCCTGCGCGGCATCAAAATTGCCACCATCATGCAGAACCCGCGCAGCGCCTTTAATc < 1:1897301/90‑1 (MQ=255) tttAGCCGATGGCAAACCGGTTTCGCCTTGCGCCCTGCGCGGCATCAAAATTGCCACCATCATGCAGAACCCGCGCAGCGCCTTTAATcc < 2:1796816/90‑1 (MQ=255) tttAGCCGATGGCAAACCGGTTTCGCCTTGCGCCCTGCGCGGCATCAAAATTGCCACCATCATGCAGAACCCGCGCAGCGCCTTTAATcc < 2:122370/90‑1 (MQ=255) tctAGCCAAGGGCAAAAGGGTTTCGCCTTGCGCCCTGCGCGGCATCAAAATTGCCACCATCATGCAGAACCCGCGCAGCGCCTTTAATcc < 2:1501023/88‑1 (MQ=255) tAGCCGATGGCAAACCGGTTTCGCCTTGCGCCCTGCGCGGCATCAAAATTGCCACCATCATGCAGAACCCGCGCAGCGCCTTTAATCCAc < 2:1134053/90‑1 (MQ=255) tAGCCGATGGCAAACCGGTTTCGCCTTGCGCCCTGCGCGGCATCAAAATTGCCACCATCATGCAGAACCCGCGCAGCGCCTTTAATCCAc < 1:1452967/90‑1 (MQ=255) aGCCGATGGCAAACCGGTTTCGCCTTGCGCCCTGCGCGGCATCAAAATTGCCACCATCATGCAGAACCCGCGCAGCGCCTTTAATCCACt < 1:337651/90‑1 (MQ=255) gCCGATGGCAAACCGGTTTCGCCTTGCGCCCTGCGCGGCATCAAAATTGCCACCATCATGCAGAACCCGCGCAGCGCCTTTAATCCACTg < 2:1649751/90‑1 (MQ=255) gATGGCAAACCGGTTTCGCCTTGCGCCCTGCGCGGCATCAAAATTGCCACCATCATGCAGAACCCGCGCAGCGCCTTTAATCCACTGcac < 1:163862/90‑1 (MQ=255) aTGGCAAACCGGTTTCGCCTTGCGCCCTGCGCGGCATCAAAATTGCCACCATCATGCAGAACCCGCGCAGCGCCTTTAATCCACTGcaca > 1:60843/1‑90 (MQ=255) aTGGCAAACCGGTTTCGCCTTGCGCCCTGCGCGGCATCAAAATTGCCACCATCATGCAGAACCCGCGCAGCGCCTTTAATCCACTGcaca < 1:724009/90‑1 (MQ=255) tGGCAAACCGGTTTCGCCTTGCGCCCTGCGCGGCATCAAAATTGCCACCATCATGCAGAACCCGCGCAGCGCCTTTAATCCACTGCacac < 1:1347101/90‑1 (MQ=255) tGGCAAACCGGTTTCGCCTTGCGCCCTGCGCGGCATCAAAATTGCCACCATCATGCAGAACCCGCGCAGCGCCTTTAATCCACTGCacac < 1:240242/90‑1 (MQ=255) tGGCAAACCGGTTTCGCCTTGCGCCCTGCGCGGCATCAAAATTGCCACCATCATGCAGAACCCGCGCAGCGCCTTTAATCCACTGCacac < 1:1011541/90‑1 (MQ=255) tGGCAAACCGGTTTCGCCTTGCGCCCTGCGCGGCATCAAAATTGCCACCATCATGCAGAACCCGCGCAGCGCCTTTAATCCACTGCacac > 2:1432745/1‑90 (MQ=255) tGGCAAACCGGTTTCGCCTTGCGCCCTGCGCGGCATCAAAATTGCCACCATCATGCAGAACCCGCGCAGCGCCTTTAATCCACTGCacac < 1:475863/90‑1 (MQ=255) gCAAACCGGTTTCGCCTTGCGCCCTGCGCGGCATCAAAATTGCCACCATCATGCAGAACCCGCGCAGCGCCTTTAATCCACTGCACACCa < 1:1076667/90‑1 (MQ=255) aaCCGGTTTCGCCTTGCGCCCTGCGCGGCATCAAAATTGCCACCATCATGCAGAACCCGCGCAGCGCCTTTAATCCACTGCACACCATGc > 2:872803/1‑90 (MQ=255) aaCCGGTTTCGCCTTGCGCCCTGCGCGGCATCAAAATTGCCACCATCATGCAGAACCCGCGCAGCGCCTTTAATCCACTGCACACCATGc > 2:651299/1‑90 (MQ=255) ccGGTTTCGCCTTGCGCCCTGCGCGGCATCAAAATTGCCACCATCATGCAGAACCCGCGCAGCGCCTTTAATCCACTGCACACCATGcac < 1:151346/90‑1 (MQ=255) gTTTCGCCTTGCGCCCTGCGCGGCATCAAAATTGCCACCATCATGCAGAACCCGCGCAGCGCCTTTAATCCACTGCacac < 1:1853038/80‑1 (MQ=255) gTTTCGCCTTGCGCCCTGCGCGGCATCAAAATTGCCACCATCATGCAGAACCCGCGCAGCGCCTTTAATCCACTGCacac > 2:1853038/1‑80 (MQ=255) tCGCCTTGCGCCCTGCGCGGCATCAAAATTGCCACCATCATGCAGAACCCGCGCAGCGCCTTTAATCCACTGCACACCATGCACACCCAc < 2:1026436/90‑1 (MQ=255) gCCTTGCGCCCTGCGCGGCATCAAAATTGCCACCATCATGCAGAACCCGCGCAGCGCCTTTAATCCACTGCACACCATGCACACCCAcgc < 1:1532103/90‑1 (MQ=255) gcCCTGCGCGGCATCAAAATTGCCACCATCATGCAGAACCCGCGCAGCGCCTTTAATCCACTGCACACCATGCACACCCACGCGCGGGaa < 2:1023217/90‑1 (MQ=255) gcTGCGCGGCATCAAAATTGCCACCATCATGCAGAACCCGCGCAGCGCCTTTAATCCACTGCACACCATGCACACCCACGCGCGGGAAAc > 2:1044378/2‑90 (MQ=255) ccTGCGCGGCATCAAAATTGCCACCATCATGCAGAACCCGCGCAGCGCCTTTAATCCACTGCACACCATGCACACCCACGCGCGGGAAAc < 1:140538/90‑1 (MQ=255) cTGCGCGGCATCAAAATTGCCACCATCATGCAGAACCCGCGCAGCGCCTTTAATCCACTGCacac > 2:1617154/1‑65 (MQ=255) cTGCGCGGCATCAAAATTGCCACCATCATGCAGAACCCGCGCAGCGCCTTTAATCCACTGCacac < 1:1617154/65‑1 (MQ=255) tGCGCGGCATCAAAATTGCCACCATCATGCAGAACCCGCGCAGCGCCTTTAATCCACTGCACACCATGCACACCCACGCGCGGGAAAcct > 1:1084399/1‑90 (MQ=255) tGCGCGGCATCAAAATTGCCACCATCATGCAGAACCCGCGCAGCGCCTTTAATCCACTGCACACCATGCACACCCACGCGCGGGAAAcct > 1:15982/1‑90 (MQ=255) cgGCATCAAAATTGCCACCATCATGCAGAACCCGCGCAGCGCCTTTAATCCACTGCACACCATGCACACCCACGCGCGGGAAAcctgcct < 1:1016232/90‑1 (MQ=255) cgGCATCAAAATTGCCACCATCATGCAGAACCCGCGCAGCGCCTTTAATCCACTGCACACCATGCACACCCACGCGCGGGAAAcctgcct < 2:914683/90‑1 (MQ=255) cgGCATCAAAATTGCCACCATCATGCAGAACCCGCGCAGCGCCTTTAATCCACTGCACACCATGCACACCCACGCGCGGGAAAcctgcct < 2:1084399/90‑1 (MQ=255) cgGCATCAAAATTGCCACCATCATGCAGAACCCGCGCAGCGCCTTTAATCCACTGCACACCATGCACACCCACGCGCGGGAAAcctgcct < 1:179075/90‑1 (MQ=255) cgGCATCAAAATTGCCACCATCATGCAGAACCCGCGCAGCGCCTTTAATCCACTGCACACCATGCACACCCACGCGCGGGAAAcctgcct < 1:1367506/90‑1 (MQ=255) cgGCATCAAAATTGCCACCATCATGCAGAACCCGCGCAGCGCCTTTAATCCACTGCACACCATGCACACCCACGCGCGGGAAAcctgcct < 1:1885836/90‑1 (MQ=255) cgGCATCAAAATTGCCACCATCATGCAGAACCCGCGCAGCGCCTTTAATCCACTGCACACCATGCACACCCACGCGCGGGAAAcctgcct < 1:206067/90‑1 (MQ=255) cgGCATCAAAATTGCCACCATCATGCAGAACCCGCGCAGCGCCTTTAATCCACTGCACACCATGCACACCCACGCGCGGGAAAcctgcct < 2:653959/90‑1 (MQ=255) gCATCAAAATTGCCACCATCATGCAGAACCCGCGCAGCGCCTTTAATCCACTGCACACCATGCACACCCACGCGCGGGAAACCTGCCTgg > 1:1741093/1‑90 (MQ=255) cATCAAAATTGCCACCATCATGCAGAACCCGCGCAGCGCCTTTAATCCACTGcac > 1:1477379/1‑55 (MQ=255) cATCAAAATTGCCACCATCATGCAGAACCCGCGCAGCGCCTTTAATCCACTGcac < 2:1477379/55‑1 (MQ=255) cAAAATTGCCACCATCATGCAGAACCCGCGCAGCGCCTTTAATCCACTGCCCCCCATGCACACCCACGCGCGGGAAACCTGCCTGGCGtt < 2:1498717/90‑1 (MQ=255) aaaaTTGCCACCATCATGCAGAACCCGCGCAGCGCCTTTAATCCACTGCACACCATGCACACCCACGCGCGGGAAACCTGCCTGGCGTTa > 1:263295/1‑90 (MQ=255) aaaaTTGCCACCATCATGCAGAACCCGCGCAGCGCCTTTAATCCACTGCACACCATGCACACCCACGCGCGGGAAACCTGCCTGGCGTTa > 2:1590606/1‑90 (MQ=255) tGCCACCATCATGCAGAACCCGCGCAGCGCCTTTAATCCACTGCACACCATGCACACCCACGCGCGGGAAACCTGCCTGGCGTTAGGGaa > 2:1253249/1‑90 (MQ=255) tGCCACCATCATGCAGAACCCGCGCAGCGCCTTTAATCCACTGCACACCATGCACACCCACGCGCGGGAAACCTGCCTGGCGTTAGGGaa > 1:1315901/1‑90 (MQ=255) tGCCACCATCATGCAGAACCCGCGCAGCGCCTTTAATCCACTGCACACCATGCACACCCACGCGCGGGAAACCTGCCTGGCGTTAGGGaa > 1:1547482/1‑90 (MQ=255) tGCCACCATCATGCAGAACCCGCGCAGCGCCTTTAATCCACTGCACACCATGCACACCCACGCGCGGGAAACCTGCCTGGCGTTAGGGaa > 1:928171/1‑90 (MQ=255) atGCAGAACCCGCGCAGCGCCTTTAATCCACTGCACACCATGCACACCCACGCGCGGGAAACCTGCCTGGCGTTAGGGAAACCCGCCGAt > 1:523909/1‑90 (MQ=255) gCAGAACCCGCGCAGCGCCTTTAATCCACTGCACACCATGCACACCCACGCGCGGGAAACCTGCCTGGCGTTAGGGAAACCCGCCGATGa > 1:1866546/1‑90 (MQ=255) aGACCCCGCGCAGCCCTTTAAACCCACTCCCCACCATCCCCCCCCCCGCGGGGGAACCCCGCGGGGCGTTAGGAAACCCCGCCGATGacg < 1:1253249/90‑1 (MQ=255) gcccccGCGCAGCCCTTTTAACCCCCCCCCCCCCACCCCCCCCCCCGGGGGGAAACCCTGCTTGGGGTAAGGAAAACCCGCCGATGacgc < 2:1012816/87‑1 (MQ=255) gaccccGCGCAGCCCTTTTAACCCCCTGCCCCCCATGCCCCCCCCCGCGGGGAAAACCTGCCGGGCGTTAGGGAACCCCGCCGATGacgc < 1:722629/87‑1 (MQ=255) gAACCCGCGCAGCGCCTTTAATCCACTGCACACCATGCACACCCACGCGCGGGAAACCTGCCTGGCGTTAGGGAAACCCGCCGATGacgc > 1:1867186/1‑90 (MQ=255) gAACCCGCGCAGCGCCTTTAATCCACTGCACACCATGCACACCCACGCGCGGGAAACCTGCCTGGCGTTAGGGAAACCCGCCGATGacgc > 2:1639422/1‑90 (MQ=255) gAACCCGCGCAGCGCCTTTAATCCACTGCACACCATGCACACCCACGCGCGGGAAACCTGCCTGGCGTTAGGGAAACCCGCCGATGacgc > 1:1715766/1‑90 (MQ=255) gAACCCGCGCAGCGCCTTTAATCCACTGCACACCATGCACACCCACGCGCGGGAAACCTGCCTGGCGTTAGGGAAACCCGCCGATGacgc > 1:1457578/1‑90 (MQ=255) aaccccGCGCAGCCCTTTTAACCCCCTCCCCCCCATCCCCCCCCCCGGGGGGGAACCCTGCCGGGGGTTAGGAAACCCCGCCGATGacgc < 2:60843/87‑1 (MQ=255) aCCCGCGCAGCGCCTTTAATCCACTGCACACCATGCACACCCACGCGCGGGAAACCTGCCTGGCGTTAGGGAAACCCGCCGATGacgcta > 1:1517943/1‑90 (MQ=255) gcgcAGCGCCTTTAATCCACTGCACACCATGCACACCCACGCGCGGGAAACCTGCCTGGCGTTAGGGAAACCCGCCGATGacgctacgct > 1:346436/1‑90 (MQ=255) gcgcAGCGCCTTTAATCCACTGCACACCATGCACACCCACGCGCGGGAAACCTGCCTGGCGTTAGGGAAACCCGCCGATGacgctacgct > 2:1061156/1‑90 (MQ=255) gcgcAGCGCCTTTAATCCACTGCACACCATGCACACCCACGCGCGGGAAACCTGCCTGGCGTTAGGGAAACCCGCCGATGacgctacgct > 2:1043857/1‑90 (MQ=255) gcgcCTTTAATCCACTGCACACCATGCACACCCACGCGCGGGAAACCTGCCTGGCGTTAGGGAAACCCGCCGATGACGCTACGCTTACCg > 2:1901987/1‑90 (MQ=255) | GCGGGGGAAATTTTAGCCGATGGCAAACCGGTTTCGCCTTGCGCCCTGCGCGGCATCAAAATTGCCACCATCATGCAGAACCCGCGCAGCGCCTTTAATCCACTGCACACCATGCACACCCACGCGCGGGAAACCTGCCTGGCGTTAGGGAAACCCGCCGATGACGCTACGCTTACCG > NZ_CP009273/3610555‑3610732 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 31 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |