mutation predictions | marginal predictions | summary statistics | genome diff | command line log
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breseq version 0.35.4 revision f352f80f4bc9
mutation predictions | marginal predictions | summary statistics | genome diff | command line log |
| Predicted mutation | |||||
|---|---|---|---|---|---|
| evidence | position | mutation | annotation | gene | description |
| MC JC | 2,399,465 | Δ7 bp | coding (650‑656/939 nt) | lrhA ← | transcriptional regulator LrhA |
| Unassigned missing coverage evidence | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|
| seq id | start | end | size | ←reads | reads→ | gene | description | |||
| * | * | ÷ | NZ_CP009273 | 356971 | 357567 | 597 | 2 [1] | [0] 4 | lacA | galactoside O‑acetyltransferase |
| * | * | ÷ | NZ_CP009273 | 806079 | 806087 | 9 | 2 [1] | [0] 5 | bioF | 8‑amino‑7‑oxononanoate synthase |
| * | * | ÷ | NZ_CP009273 | 1342104 | 1342108 | 5 | 2 [1] | [0] 2 | rnb | exoribonuclease II |
| * | * | ÷ | NZ_CP009273 | 2118419 | 2118428 | 10 | 4 [1] | [1] 2 | wcaI | colanic acid biosynthesis fucosyltransferase WcaI |
| Unassigned new junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NZ_CP009273 | 360104 = | NA (NA) | 58 (2.380) | 21/166 | 0.1 | 50.0% | intergenic (‑35/+251) | lacZ/BW25113_RS23320 | beta‑galactosidase/relaxase/mobilization nuclease domain‑containing protein |
| ? | NZ_CP009273 | = 360286 | 58 (2.380) | intergenic (‑217/+69) | lacZ/BW25113_RS23320 | beta‑galactosidase/relaxase/mobilization nuclease domain‑containing protein | |||||
| * | ? | NZ_CP009273 | 1203246 = | 11 (0.450) | 3 (0.150) | 3/134 | 1.7 | 33.6% | coding (290/630 nt) | BW25113_RS05990 | hypothetical protein |
| ? | NZ_CP009273 | 1205075 = | 3 (0.150) | coding (40/540 nt) | BW25113_RS06005 | phage tail protein | |||||