mutation predictions | marginal predictions | summary statistics | genome diff | command line log
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breseq version 0.35.4 revision f352f80f4bc9
mutation predictions | marginal predictions | summary statistics | genome diff | command line log |
| Marginal read alignment evidence (highest frequency 20 of 39 shown, sorted by frequency from high to low) | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NZ_CP009273 | 536,014 | 0 | T | G | 63.2% | 5.1 / 17.6 | 19 | intergenic (+50/‑7) | allB/ybbY | allantoinase AllB/uracil/xanthine transporter |
| * | NZ_CP009273 | 4,594,161 | 0 | C | T | 60.0% | ‑0.6 / 14.5 | 20 | S62F (TCT→TTT) | bglJ | DNA‑binding transcriptional activator BglJ |
| * | NZ_CP009273 | 4,594,167 | 0 | C | T | 60.0% | ‑4.9 / 17.3 | 20 | S64F (TCT→TTT) | bglJ | DNA‑binding transcriptional activator BglJ |
| * | NZ_CP009273 | 1,430,449 | 0 | A | C | 59.1% | 14.7 / 22.4 | 22 | G234G (GGT→GGG) | ompN | porin OmpN |
| * | NZ_CP009273 | 2,778,686 | 0 | T | G | 58.8% | 7.1 / 14.5 | 17 | intergenic (‑316/+435) | BW25113_RS25705/BW25113_RS13825 | DUF5507 domain‑containing protein/tRNA‑Ile |
| * | NZ_CP009273 | 172,078 | 0 | T | G | 58.3% | 5.9 / 19.3 | 24 | V162G (GTG→GGG) | clcA | H(+)/Cl(‑) exchange transporter ClcA |
| * | NZ_CP009273 | 970,375 | 0 | A | G | 58.3% | 6.8 / 10.2 | 12 | I201V (ATT→GTT) | mukF | chromosome partition protein MukF |
| * | NZ_CP009273 | 726,192 | 0 | A | C | 57.1% | 11.7 / 15.0 | 14 | D385A (GAC→GCC) | rhsC | rhs element protein RhsC |
| * | NZ_CP009273 | 726,206 | 0 | A | C | 57.1% | 10.2 / 12.0 | 14 | T390P (ACC→CCC) | rhsC | rhs element protein RhsC |
| * | NZ_CP009273 | 949,854 | 0 | A | C | 57.1% | 7.8 / 11.7 | 14 | G23G (GGT→GGG) | focA | formate transporter FocA |
| * | NZ_CP009273 | 4,501,865 | 0 | A | C | 56.2% | 6.8 / 16.6 | 16 | L123V (TTG→GTG) | fecD | Fe(3+) dicitrate ABC transporter permease subunit FecD |
| * | NZ_CP009273 | 3,498,447 | 0 | C | T | 56.0% | 2.9 / 28.3 | 25 | S311S (TCG→TCA) | yhfS | aminotransferase class I/II‑fold pyridoxal phosphate‑dependent enzyme |
| * | NZ_CP009273 | 1,430,446 | 0 | A | C | 54.5% | 20.3 / 26.0 | 22 | G235G (GGT→GGG) | ompN | porin OmpN |
| * | NZ_CP009273 | 2,141,241 | 0 | C | A | 54.5% | ‑1.4 / 12.1 | 11 | N29K (AAC→AAA) | yegD | molecular chaperone |
| * | NZ_CP009273 | 2,258,443 | 0 | A | G | 53.8% | 8.8 / 16.3 | 13 | N368D (AAT→GAT) | setB | sugar efflux transporter SetB |
| * | NZ_CP009273 | 3,291,076 | 0 | A | C | 53.8% | 3.4 / 13.3 | 13 | V141G (GTG→GGG) | yraQ | permease |
| * | NZ_CP009273 | 4,464,506 | 0 | A | G | 53.7% | 32.4 / 48.5 | 41 | E189G (GAA→GGA) | bdcR | TetR/AcrR family transcriptional regulator |
| * | NZ_CP009273 | 172,755 | 0 | A | G | 53.3% | 4.2 / 14.3 | 15 | T388A (ACG→GCG) | clcA | H(+)/Cl(‑) exchange transporter ClcA |
| * | NZ_CP009273 | 4,336,492 | 0 | T | G | 53.3% | 10.9 / 19.0 | 15 | T218P (ACC→CCC) | fumB | class I fumarate hydratase |
| * | NZ_CP009273 | 4,572,320 | 0 | C | A | 52.9% | 10.7 / 24.8 | 17 | L182F (TTG→TTT) | hsdM | type I restriction‑modification system methyltransferase |