| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NZ_CP009273 | 3256491 = | 37 (1.270) | 3 (0.120) | 3/148 | 2.0 | 8.1% | coding (529/1209 nt) | tdcD | propionate kinase |
| ? | NZ_CP009273 | 3256545 = | 36 (1.420) | coding (475/1209 nt) | tdcD | propionate kinase | |||||
| Rejected: Frequency below/above cutoff threshold. | |||||||||||
AGTTTCCACCAGACGATGGCTCCGGAAGCTTATTTATACGGCCTGCCGTGGAAATATTATGAAGAGTTAGGTGTACGCCGTTATGGTTTCCACGGCA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NZ_CP009273/3256587‑3256491‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑tttccacggcaGGCCGTATAAATAAGCTTCCGGAGCCATCGTCTGGTGGAAACTGGTATCAAATACCGCCACCTGAGTTACGCCCGGAAATAATTGCTGC > NZ_CP009273/3256545‑3256633 AGTTTCCACCAGACGATGGCTCCGGAAGCTTATTTATACGGCCTGCCGTGGAAATATTATGAAGAGTTAGGTGTACGCCGTTATGGTTTC > 1:596081/1‑90 CCACCAGACGATGGCTCCGGAAGCTTATTTATACGGCCTGCCGTGGAAATATTATGAAGAGTTAGGTGTACGCCGTTATGGTTTCCACGG < 1:719243/90‑1 AGACGATGGCTCCGGAAGCTTATTTATACGGCCTGCCGTGGAAATATTATGAAGAGTTAGGTGTACGCCGTTATGGTTTCCACGGCAGGC < 2:615939/90‑1 TTTATACGGCCTGCCGTGGAAATATTATGAAGAGTTAGGTGTACGCCGTTATGGTTTCCACGGCAGGCCGTATAAATAAGCTTCCGGAGC < 1:494510/90‑1 TATACGGCCTGCCGTGGAAATATTATGAAGAGTTAGGTGTACGCCGTTATGGTTTCCACGGCAGGCCGTATAAATAAGCTTCCGGAGCCA < 2:247608/90‑1 ACGGCAGGCCGTATAAATAAGCTTCCGGAGCCATCGTCTGGTGGAAACTGGTATCAAATACCGCCACCTGAGTTACGCCCGGAAATAATT > 2:32700/1‑90 GGCAGGCCGTATAAATAAGCTTCCGGAGCCATCGTCTGGTGGAAACTGGTATCAAATACCGCCACCTGAGTTACGCCCGGAAATAATTGC > 2:241702/1‑90 GCAGGCCGTATAAATAAGCTTCCGGAGCCATCGTCTGGTGGAAACTGGTATCAAATACCGCCACCTGAGTTACGCCCGGAAATAATTGCT > 1:426336/1‑90 GCAGGCCGTATAAATAAGCTTCCGGAGCCATCGTCTGGTGGAAACTGGTATCAAATACCGCCACCTGAGTTACGCCCGGAAATAATTGCT > 1:554342/1‑90 CAGGCCGTATAAATAAGCTTCCGGAGCCATCGTCTGGTGGAAACTGGTATCAAATACCGCCACCTGAGTTACGCCCGGAAATAATTGCTG > 2:75403/1‑90 AGGCCGTATAAATAAGCTTCCGGAGCCATCGTCTGGTGGAAACTGGTATCAAATACCGCCACCTGAGTTACGCCCGGAAATAATTGCTGC > 1:84564/1‑90 AGTTTCCACCAGACGATGGCTCCGGAAGCTTATTTATACGGCCTGCCGTGGAAATATTATGAAGAGTTAGGTGTACGCCGTTATGGTTTCCACGGCA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NZ_CP009273/3256587‑3256491‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑tttccacggcaGGCCGTATAAATAAGCTTCCGGAGCCATCGTCTGGTGGAAACTGGTATCAAATACCGCCACCTGAGTTACGCCCGGAAATAATTGCTGC > NZ_CP009273/3256545‑3256633 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 30 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |