| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NZ_CP009273 | 3256491 = | 37 (1.270) | 3 (0.120) | 3/148 | 2.0 | 8.1% | coding (529/1209 nt) | tdcD | propionate kinase |
| ? | NZ_CP009273 | 3256545 = | 36 (1.420) | coding (475/1209 nt) | tdcD | propionate kinase | |||||
| Rejected: Frequency below/above cutoff threshold. | |||||||||||
ATTGCCAAGATGCGCCACAACCAGGCCGGAGTCATCTTCCGCCAGATTCAGCAGCGAATGTGCGCGCTGGGAAACATAGCGGTGCGACGTGCCGTGGAAACCATAACGGCGTACACCTAACTCTTCATAATATTTCCACGGCAGGCCGTATAAATAAGCTTCCGGAGCCATCGTCT > NZ_CP009273/3256402‑3256577 | gcagcaattatttccgggcgtaactcaggtggcggtatttgataccagtttccaccagacgatggctccggaagcttatttatacggcct > 1:84564‑M1/90‑90 (MQ=255) cagcaattatttccgggcgtaactcaggtggcggtatttgataccagtttccaccagacgatggctccggaagcttatttatacggccTg > 2:75403‑M1/89‑90 (MQ=255) agcaattatttccgggcgtaactcaggtggcggtatttgataccagtttccaccagacgatggctccggaagcttatttatacggccTGc > 1:554342‑M1/88‑90 (MQ=255) agcaattatttccgggcgtaactcaggtggcggtatttgataccagtttccaccagacgatggctccggaagcttatttatacggccTGc > 1:426336‑M1/88‑90 (MQ=255) gcaattatttccgggcgtaactcaggtggcggtatttgataccagtttccaccagacgatggctccggaagcttatttatacggccTGcc > 2:241702‑M1/87‑90 (MQ=255) aattatttccgggcgtaactcaggtggcggtatttgataccagtttccaccagacgatggctccggaagcttatttatacggccTGCCGt > 2:32700‑M1/85‑90 (MQ=255) aGATGCGCCACAACCAGGCCGGAGTCATCTTCCGCCAGATTCAGCAGCGAATGTGCGCGCTGGGAAACATAGCGGTGCGACGTGCCGTgg < 1:466463/90‑1 (MQ=255) aTGCGCCCCAGCCAGGCCGGAGTCATCTTCCGCCAGATTCAGCAGCGAATGTGCGCGCTGGGAAACATAGCGGTGCGACGTGCCGTGGaa < 2:663417/90‑1 (MQ=255) aTGCGCCACAACCAGGCCGGAGTCATCTTCCGCCAGATTCAGCAGCGAATGTGCGCGCTGGGAAACATAGCGGTGCGACGTGCCGTGGaa < 1:261327/90‑1 (MQ=255) tGCGCCACAACCAGGCCGGAGTCATCTTCCGCCAGATTCAGCAGCGAATGTGCGCGCTGGGAAACATAGCGGTGCGACGTGCCGTGGaaa > 1:525973/1‑90 (MQ=255) gcgcCACAACCAGGCCGGAGTCATCTTCCGCCAGATTCAGCAGCGAATGTGCGCGCTGGGAAACATAGCGGTGCGACGTGCCGTGGAAAc > 2:533260/1‑90 (MQ=255) cgcCACAACCAGGCCGGAGTCATCTTCCGCCAGATTCAGCAGCGAATGTGCGCGCTGGGAAACATAGCGGTGCGACGTGCCGTGGAAAcc < 1:94459/90‑1 (MQ=255) gcCACAACCAGGCCGGAGTCATCTTCCGCCAGATTCAGCAGCGAATGTGCGCGCTGGGAAACATAGCGGTGCGACGTGCCGTGGAAACCa > 2:459690/1‑90 (MQ=255) acaACCAGGCCGGAGTCATCTTCCGCCAGATTCAGCAGCGAATGTGCGCGCTGGGAAACATAGCGGTGCGACGTGCCGTGGAAACCATaa < 1:76227/90‑1 (MQ=255) aGGCCGGAGTCATCTTCCGCCAGATTCAGCAGCGAATGTGCGCGCTGGGAAACATAGCGGTGCGACGTGCCGTGGAAACCATAACGGCGt < 2:229374/90‑1 (MQ=255) ggCCGGAGTCATCTTCCGCCAGATTCAGCAGCGAATGTGCGCGCTGGGAAACATAGCGGTGCGACGTGCCGTGGAAACCATAACGGCGTa < 1:798357/90‑1 (MQ=255) ggCCGGAGTCATCTTCCGCCAGATTCAGCAGCGAATGTGCGCGCTGGGAAACATAGCGGTGCGACGTGCCGTGGAAACCATAACGGCGTa < 2:306019/90‑1 (MQ=255) ggCCGGAGTCATCTTCCGCCAGATTCAGCAGCGAATGTGCGCGCTGGGAAACATAGCGGTGCGACGTGCCGTGGAAACCATAACGGCGTa < 2:6332/90‑1 (MQ=255) ggCCGGAGTCATCTTCCGCCAGATTCAGCAGCGAATGTGCGCGCTGGGAAACATAGCGGTGCGACGTGCCGTGGAAACCATAACGGCGTa > 1:306019/1‑90 (MQ=255) gCCGGAGTCATCTTCCGCCAGATTTAGCAGCGAATGTGCGCGCTGGGAAACATAGCGGTGCGACGTGCCGTGGAAACCATAACGGCGTac < 1:297862/90‑1 (MQ=255) gCCGGAGTCATCTTCCGCCAGATTCAGCAGCGAATGTGCGCGCTGGGAAACATAGCGGTGCGACGTGCCGTGGAAACCATAACGGCGTac < 1:10603/90‑1 (MQ=255) ggAGTCATCTTCCGCCAGATTCAGCAGCGAATGTGCGCGCTGGGAAACATAGCGGTGCGACGTGCCGTGGAAACCATAACGGCGTACAcc > 2:126659/1‑90 (MQ=255) tCATCTTCCGCCAGATTCAGCAGCGAATGTGCGCGCTGGGAAACATAGCGGTGCGACGTGCCGTGGAAACCATAACGGCGTACACCTAAc < 2:592228/90‑1 (MQ=255) tCATCTTCCGCCAGATTCAGCAGCGAATGTGCGCGCTGGGAAACATAGCGGTGCGACGTGCCGTGGAAACCATAACGGCGTACACCTAAc < 1:429956/90‑1 (MQ=255) tCATCTTCCGCCAGATTCAGCAGCGAATGTGCGCGCTGGGAAACATAGCGGTGCGACGTGCCGTGGAAACCATAACGGCGTACACCTAAc < 1:402439/90‑1 (MQ=255) aTCTTCCGCCAGATTCAGCAGCGAATGTGCGCGCTGGGAAACATAGCGGTGCGACGTGCCGTGGAAACCATAACGGCGTACACCTAActc > 1:826254/1‑90 (MQ=255) cGCCAGATTCAGCAGCGAATGTGCGCGCTGGGAAACATAGCGGTGCGACGTGCCGTGGAAACCATAACGGCGTACACCTAACTCTTCata < 1:476952/90‑1 (MQ=255) cAGATTCAGCAGCGAATGTGCGCGCTGGGAAACATAGCGGTGCGACGTGCCGTGGAAACCATAACGGCGTACACCTAACTCTTCataata < 2:567411/90‑1 (MQ=255) cagcGAATGTGCGCGCTGGGAAACATAGCGGTGCGACGTGCCGTGGAAACCATAACGGCGTACACCTAACTCTTCATAATATTTCCACgg < 1:390275/90‑1 (MQ=255) gcGAATGTGCGCGCTGGGAAACATAGCGGTGCGACGTGCCGTGGAAACCATAACgg < 2:778229/56‑1 (MQ=255) gcGAATGTGCGCGCTGGGAAACATAGCGGTGCGACGTGCCGTGGAAACCATAACgg > 1:778229/1‑56 (MQ=255) gcGAATGTGCGCGCTGGGAAACATAGCGGTGCGACGTGCCGTGGAAACCATAACGGCGTACACCTAACTCTTCATAATATTTCCACGGCa > 1:387747/1‑90 (MQ=255) gcGAATGTGCGCGCTGGGAAACATAGCGGTGCGACGTGCCGTGGAAACCATAACGGCGTACACCTAACTCTTCATAATATTTCCACGGCa > 1:377005/1‑90 (MQ=255) aaTGTGCGCGCTGGGAAACATAGCGGTGCGACGTGCCGTGGAAACCATAACGGCGTACACCTAACTCTTCATAATATTTCCACGGCAGGc < 1:612996/90‑1 (MQ=255) tggctccggaagcttatttatacggccTGCCGTGGAAACCATAACGGCGTACACCTAACTCTTCATAATATTTCCACGGCAGGCCGtata < 2:247608‑M1/63‑1 (MQ=255) gctccggaagcttatttatacggccTGCCGTGGAAACCATAACGGCGTACACCTAACTCTTCATAATATTTCCACGGCAGGCCGTataaa < 1:494510‑M1/65‑1 (MQ=255) gcTGGGAAACATAGCGGTGCGACGTGCCGTGGAAACCATAACGGCGTACACCTAACTCTTCATAATATTTCCACGGCAGGCCGTataaat > 2:558632/1‑90 (MQ=255) cATAGCGGTGCGACGTGCCGTGGAAACCATAACGGCGTACACCTAACTCTTCATAATATTTCCACGGCAGGCCGTATAAATAAGCTTCCg > 1:811492/1‑90 (MQ=255) aTAGCGGTGCGACGTGCCGTGGAAACCATAACGGCGTACACCTAACTCTTCATAATATTTCCACGGCAGGCCGTATAAATAAGCTTCCgg < 1:14442/90‑1 (MQ=255) tAGCGGTGCGACGTGCCGTGGAAACCATAACGGCGTACACCTAACTCTTCATAATATTTCCACGGCAGGCCGTATAAATAAGCTTCCGGa > 2:287353/1‑90 (MQ=255) tAGCGGTGCGACGTGCCGTGGAAACCATAACGGCGTACACCTAACTCTTCATAATATTTCCACGGCAGGCCGTATAAATAAGCTTCCGGa > 2:423558/1‑90 (MQ=255) gTGCGACGTGCCGTGGAAACCATAACGGCGTACACCTAACTCTTCATAATATTTCCACGGCAGGCCGTATAAATAAGCTTCCGGAGCCAt < 1:459690/90‑1 (MQ=255) gCGACGTGCCGTGGAAACCATAACGGCGTACACCTAACTCTTCATAATATTTCCACGGCAGGCCGTATAAATAAGCTTCCGGAGCCATCg > 2:10274/1‑90 (MQ=255) gCGACGTGCCGTGGAAACCATAACGGCGTACACCTAACTCTTCATAATATTTCCACGGCAGGCCGTATAAATAAGCTTCCGGAGCCATCg > 2:765803/1‑90 (MQ=255) gccTGCCGTGGAAACCATAACGGCGTACACCTAACTCTTCATAATATTTCCACGGCAGGCCGTATAAATAAGCTTCCGGAGCCATCGTCt < 2:615939‑M1/87‑1 (MQ=255) aCGTGCCGTGGAAACCATAACGGCGTACACCTAACTCTTCATAATATTTCCACGGCAGGCCGTATAAATAAGCTTCCGGAGCCATCGTCt > 2:732168/1‑90 (MQ=255) | ATTGCCAAGATGCGCCACAACCAGGCCGGAGTCATCTTCCGCCAGATTCAGCAGCGAATGTGCGCGCTGGGAAACATAGCGGTGCGACGTGCCGTGGAAACCATAACGGCGTACACCTAACTCTTCATAATATTTCCACGGCAGGCCGTATAAATAAGCTTCCGGAGCCATCGTCT > NZ_CP009273/3256402‑3256577 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 23 ≤ ATCG/ATCG < 31 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |