Missing coverage evidence...
			seq id	start	end	size	←reads	reads→	gene	description
*	*	÷	NZ_CP009273	1238992	1239036	45	3 [1]	[1] 3	emtA	membrane‑bound lytic murein transglycosylase EmtA

TTATCGCCGTATGGGCTGGAGTGGTGAGCCGACGACCAGCGAGCTGAAAAATCCAGAGCGTAATATTTCAATGGGGGCGGCTTACCTGAATATTCTGGAAACCGGCCC  >  NZ_CP009273/1238911‑1239018                                                                                 |                            ttATCGCCGTATGGGCTGGAGTGGTGAGCCGACGACCAGCGAGCTGAAAAATCCAGAGCGTAATATTTCAATGGGggcggc                             >  1:343085/1‑81 (MQ=255) ttATCGCCGTATGGGCTGGAGTGGTGAGCCGACGACCAGCGAGCTGAAAAATCCAGAGCGTAATATTTCAATGGGggcggc                             <  2:343085/81‑1 (MQ=255)                  ggAGTGGTGAGCCGACGACCAGCGAGCTGAAAAATCCAGAGCGTAATA‑TTCAATGGGGGCGGCTTACCTGAATATTCTGGAAACCGGccc  >  1:105876/1‑90 (MQ=255)                                                                                 |                            TTATCGCCGTATGGGCTGGAGTGGTGAGCCGACGACCAGCGAGCTGAAAAATCCAGAGCGTAATATTTCAATGGGGGCGGCTTACCTGAATATTCTGGAAACCGGCCC  >  NZ_CP009273/1238911‑1239018

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 25 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑