Missing coverage evidence...
			seq id	start	end	size	←reads	reads→	gene	description
*	*	÷	NZ_CP009273	1238992	1239036	45	3 [1]	[1] 3	emtA	membrane‑bound lytic murein transglycosylase EmtA

GGCAGGCATTGAAGATCCGAAGGTACTGCAATATGCGCTGGTGGTGTCATACGCTAACGGGGCAGGTGCGCTGCTACGGACTTTCTCGTCAGATCGGAAAAAGGC  >  NZ_CP009273/1239022‑1239126                |                                                                                          ggcaggcaTTGAAGATCCGAAGGTACTGCAATATGCGCTGGTGGTGTCATACGCTAACGGGGCAGGTGCGCTGCTACGGACTTTCTCGTc                 <  1:224977/90‑1 (MQ=255)                tCCGAAGGTACTGCAATATGCGCTGGTGGTGTCATACGCTAACGGGGCAGGTGCGCTGCTACGGACTTTCTCGTCAGATCGGAAAAAGGc  >  2:159941/1‑90 (MQ=255)                tCCGAAGGTACTGCAATATGCGCTGGTGGTGTCATACGCTAACGGGGCAGGTGCGCTGCTACGGACTTTCTCGTCAGATCGGAAAAAGGc  >  2:43557/1‑90 (MQ=255)                |                                                                                          GGCAGGCATTGAAGATCCGAAGGTACTGCAATATGCGCTGGTGGTGTCATACGCTAACGGGGCAGGTGCGCTGCTACGGACTTTCTCGTCAGATCGGAAAAAGGC  >  NZ_CP009273/1239022‑1239126

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 30 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑