Missing coverage evidence...
			seq id	start	end	size	←reads	reads→	gene	description
*	*	÷	NZ_CP009273	4531522	4531557	36	2 [0]	[1] 2	fimB/fimE	type 1 fimbria switch DNA invertase FimB/type 1 fimbria switch DNA invertase FimE

TTATGTTCTTCAAAATAAATAAACAAAATCATTCATAAATTTACACATCACTTAAAATCTCCTGTTTCCGCACTTTTTTCTTTATTTTTTAAGCAACTGGAAGTTAATCCACTGC  >  NZ_CP009273/4531533‑4531647                          |                                                                                          ttATGTTCTTCAAAATAAATAAACAAAATCATTCATAAATTTACACATCACTTAAAATCTCCTGTTTCCGCACTTTTTTCTTTAtttttt                           >  2:103347/1‑90 (MQ=255)                          aaaTCATTCATAAATTTACACATCACTTAAAATCTCCTGTTTCCGCACTTTTTTCTTTATTTTTTAAGCAACTGGAAGTTAATCCACTGc  <  1:103347/90‑1 (MQ=255)                          |                                                                                          TTATGTTCTTCAAAATAAATAAACAAAATCATTCATAAATTTACACATCACTTAAAATCTCCTGTTTCCGCACTTTTTTCTTTATTTTTTAAGCAACTGGAAGTTAATCCACTGC  >  NZ_CP009273/4531533‑4531647

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑