| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| MC JC | NZ_CP009273 | 1,902,978 | (AAGC)2→1 | coding (43‑46/144 nt) | mgrB ← | PhoP/PhoQ regulator MgrB |
| Missing coverage evidence... | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|
| seq id | start | end | size | ←reads | reads→ | gene | description | |||
| * | * | ÷ | NZ_CP009273 | 1902971 | 1902974 | 4 | 18 [0] | [0] 18 | mgrB | PhoP/PhoQ regulator MgrB |
| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NZ_CP009273 | 1902975 = | 0 (0.000) | 15 (0.600) | 15/152 | 0.4 | 100% | coding (49/144 nt) | mgrB | PhoP/PhoQ regulator MgrB |
| ? | NZ_CP009273 | = 1902970 | 0 (0.000) | coding (54/144 nt) | mgrB | PhoP/PhoQ regulator MgrB | |||||
CGGGATAAACTGGTTAATGGCACAAATTCCGCTGAAAAATTGTACATCCTGATCGCACATCATGTTGAATACCTGCGCCCAAAGCAGCAAGCAAGCCAACACCACGACAACCAGAACGACCCATCGAAACTTTTTCACTCCAATCTCCGTTTCACCTACCTTATGTCAT > NZ_CP009273/1902886‑1903054 | accacgggataaactggttaatggcacaaattccgctgaaaaattgtacatcctgatcgcacatcatgttgaatacctgcgcccaaagca > 1:631645‑M1/90‑90 (MQ=255) cacgggataaactggttaatggcacaaattccgctgaaaaattgtacatcctgatcgcacatcatgttgaatacctgcgcccaaagcagc > 1:635773‑M1/88‑90 (MQ=255) cacgggataaactggttaatggcacaaattccgctgaaaaattgtacatcctgatcgcacatcatgttgaatacctgcgcccaaagcagc > 1:469450‑M1/88‑90 (MQ=255) actggttaatggcacaaattccgctgaaaaattgtacatcctgatcgcacatcatgttgaatacctgcgcccaaagcAGCAAGCCAacac > 1:284687‑M1/78‑90 (MQ=255) ggttaatggcacaaattccgctgaaaaattgtacatcctgatcgcacatcatgttgaatacctgcgcccaaagcAGCAAGCCAAcaccac < 1:607651‑M1/16‑1 (MQ=255) gttaatggcacaaattccgctgaaaaattgtacatcctgatcgcacatcatgttgaatacctgcgcccaaagcAGCAAGCCAACACCACg < 2:448163‑M1/17‑1 (MQ=255) ttaatggcacaaattccgctgaaaaattgtacatcctgatcgcacatcatgttgaatacctgcgcccaaagcAGCAAGCCAACACCACGa > 2:142004‑M1/73‑90 (MQ=255) aaattccgctgaaaaattgtacatcctgatcacacatcatgttgaatacctgcgcccaaagcAGCAAGCCAACACCACGACAACCAGAAc > 1:228800‑M1/63‑90 (MQ=255) tcctgatcgcacatcatgttgaatacctgcgcccaaagcAGCAAGCCAACACCACGACAACCAGAACGACCCATCGAAACTTTTTCACTc < 2:715858‑M1/51‑1 (MQ=255) acatcatgttgaatacctgcgcccaaagcAGCAAGCCAACACCACGACAACCAGAACGACCCATCGAAACTTTTTCACTCCAATCTCCGt < 2:140153‑M1/61‑1 (MQ=255) catcatgttgaatacctgcgcccaaagcAGCAAGCCAACACCACGACAACCAGAACGACCCATCGAAACTTTTTCACTCCAATCTCCGtt > 1:463098‑M1/29‑90 (MQ=255) gttgaatacctgcgcccaaagcAGCAAGCCAACACCACGACAACCAGAACGACCCATCGAAACTTTTTCACTCCAATCTCCGTTTCacct > 2:490682‑M1/23‑90 (MQ=255) atacctgcgcccaaagcAGCAAGCCAACACCACGACAACCAGAACGACCCATCGAAACTTTTTCACTCCAATCTCCGTTTCACCTACCtt < 1:753778‑M1/73‑1 (MQ=255) cctgcgcccaaagcAGCAAGCCAACACCACGACAACCAGAACGACCCATCGAAACTTTTTTACTCCAATCTCCGTTTCACCTACCTTATg < 1:59497‑M1/76‑1 (MQ=255) cctgcgcccaaagcAGCAAGCCAACACCACGACAACCAGAACGACCCATCGAAACTTTTTCACTCCAATCTCCGTTTCACCTACCTTATg > 1:448163‑M1/15‑90 (MQ=255) tgcgcccaaagcAGCAAGCCAACACCACGACAACCAGAACGACCCATCGAAACTTTTTCACTCCAATCTCCGTTTCacc < 1:94462‑M1/67‑1 (MQ=255) tgcgcccaaagcAGCAAGCCAACACCACGACAACCAGAACGACCCATCGAAACTTTTTCACTCCAATCTCCGTTTCacc > 2:94462‑M1/13‑79 (MQ=255) cgcccaaagcAGCAAGCCAACACCACGACAACCAGAACGACCCATCGAAACTTTTTCACTCCAATCTCCGTTTCACCTACCTTATGTCAt > 1:183911‑M1/11‑90 (MQ=255) | CGGGATAAACTGGTTAATGGCACAAATTCCGCTGAAAAATTGTACATCCTGATCGCACATCATGTTGAATACCTGCGCCCAAAGCAGCAAGCAAGCCAACACCACGACAACCAGAACGACCCATCGAAACTTTTTCACTCCAATCTCCGTTTCACCTACCTTATGTCAT > NZ_CP009273/1902886‑1903054 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 31 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |