New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NZ_CP009273	= 290192	39 (1.670)	21 (0.900)	13/166	0.5	35.0%	coding (319/855 nt)	BW25113_RS01425	hypothetical protein
	?	NZ_CP009273	= 378046	NA (NA)					pseudogene (262/264 nt)	BW25113_RS23340	acetyltransferase

AATGGGGATTTTTAATGGACTCATGATGTTCGTTTTCCAGATTAACGAACAGTACTCTTCCAGAGTTACTTCTGTTTTACCTCG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NZ_CP009273/290109‑290192 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑TGGATTTGCCCCTATATTTCCAGACATCTGTTATCACTTAACCCATTACAAGCCCGCTGCCGCAGATATTCCCGTGGCGAGCGATAACC  <  NZ_CP009273/378046‑377958                                                                                                                                                                               AATGGGGATTTTTAATGGACTCATGATGTTCGTTTTCCAGATTAACGAACAGTACTCTTCCAGAGTTACTTCTGTTTTACCTCGTGGATT                                                                                     <  1:592345/90‑1        ATTTTTAATGGACTCATGATGTTCGTTTTCCAGATTAACGAACAGTACTCTTCCAGAGTTACTTCTGTTTTACCTCGTGGATTTGCCCCT                                                                              <  1:150906/90‑1                   ACTCATGATGTTCGTTTTCCAGATTAACGAACAGTACTCTTCCAGAGTTACTTCTGTTTTACCTCGTGGATTTGCCCCTATATTTCCAGA                                                                   <  2:37193/90‑1                      CATGATGTTCGTTTTCCAGATTAACGAACAGTACTCTTCCAGAGTTACTTCTGTTTTACCTCGTGGATTTGCCCCTATATTTCCAGACAT                                                                <  1:440051/90‑1                             TTCGTTTTCCAGATTAACGACCACTACTCTTCCAGAGTTACTTCTCTTTTACCTCGTGGATTTGCCCCTATATTTCCAGACACCTGTTAT                                                         <  2:509761/90‑1                              TCGTTTTCCAGATTAACGAACAGTACTCTTCCAGAGTTACTTCTGTTTTACCTCGTGGATTTGCCCCTATATTTCCAGACATCTGTTATC                                                        >  2:86849/1‑90                              TCGTTTTCCAGATTAACGAACAGTACTCTTCCAGAGTTACTTCTGTTTTACCTCGTGGATTTGCCCCTATATT                                                                         >  2:233472/1‑73                              TCGTTTTCCAGATTAACGAACAGTACTCTTCCAGAGTTACTTCTGTTTTACCTCGTGGATTTGCCCCTATATT                                                                         <  1:233472/73‑1                                GTTTTCCAGATTAACGAACAGTACTCTTCCAGAGTTACTTCTGTTTTACCTCGTGGATTTGCCCCTATATTTCCAGACATCTGTTATCAC                                                      >  2:177995/1‑90                                       AGATTAACGAACAGTACTCTTCCAGAGTTACTTCTGTTTTACCTCGTGGATTTGCCCCTATATTTCCAGACATCTGTTATCACTTAACCC                                               <  2:144370/90‑1                                       AGATTAACGAACAGTACTCTTCCAGAGTTACTTCTGTTTTACCTCGTGGATTTGCCCCTATATTTCCAGACATCTGTTATCACTTAACCC                                               <  2:230441/90‑1                                       AGATTAACGAACAGTACTCTTCCAGAGTTACTTCTGTTTTACCTCGTGGATTTGCCCCTATATTTCCAGACATCTGTTATCACTTAACCC                                               <  1:262619/90‑1                                                              AGAGTTACTTCTGTTTTACCTCGTGGATTTGCCCCTATATTTCCAGACATCTGTTATCACTTAACCCATTACAAGCCCGCTGCCGCAGAT                        >  2:612322/1‑90                                                                           TTTTACCTCGTGGATTTGCCCCTATATTTCCAGACATCTGTTATCACTTAACCCATTACAAGCCCGCTGCCGCAGATATTCCCGTGGCGA           <  2:527496/90‑1                                                                               ACCTCGTGGATTTGCCCCTATATTTCCAGACATCTGTTATCACTTAACCC                                               >  2:133962/1‑50                                                                               ACCTCGTGGATTTGCCCCTATATTTCCAGACATCTGTTATCACTTAACCC                                               <  1:133962/50‑1                                                                                CCTCGTGGATTTGCCCCTATATTTCCAGACATCTGTTATCACTTAACCCATTACAAGCCCGCTGCCGCAGATATTCCCGTGGCGAGCGAT      <  2:102095/90‑1                                                                                    GTGGATTTGCCCCTATATTTCCAGACATCTGTTATCACTTAACCCATTACAAGCCCGCTGCCGCAGATATTCCCGTGGCGAGCGATAACC  >  2:139683/1‑90                                                                                    GTGGATTTGCCCCTATATTTCCAGACATCTGTTATCACTTAACCCATTACAAGCCCGCTGCCGCAGATATTCCCGTGGCGAGCGATAACC  >  2:469145/1‑90                                                                                    GTGGATTTGCCCCTATATTTCCAGACATCTGTTAT                                                         <  1:463616/35‑1                                                                                    GTGGATTTGCCCCTATATTTCCAGACATCTGTTAT                                                         >  2:463616/1‑35                                                                                                                                                                               AATGGGGATTTTTAATGGACTCATGATGTTCGTTTTCCAGATTAACGAACAGTACTCTTCCAGAGTTACTTCTGTTTTACCTCG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NZ_CP009273/290109‑290192 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑TGGATTTGCCCCTATATTTCCAGACATCTGTTATCACTTAACCCATTACAAGCCCGCTGCCGCAGATATTCCCGTGGCGAGCGATAACC  <  NZ_CP009273/378046‑377958

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 25 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.