Missing coverage evidence...
   seq id start end size ←reads reads→ gene description
* * ÷ NZ_CP009273 4487732 4487742 11 2 [0] [0] 3 BW25113_RS22170 tyrosine‑type recombinase/integrase

TGTAAACAGAGAAAGGTTTATCAGTCCATTTGAATATGCAA  >  NZ_CP009273/4487691‑4487731
                                        |
tGTAAACAGAGAAAGGTTTATCAGTCCATTTGAATATGCaa  <  1:160825/41‑1 (MQ=255)
tGTAAACAGAGAAAGGTTTATCAGTCCATTTGAATATGCaa  >  2:160825/1‑41 (MQ=255)
                                        |
TGTAAACAGAGAAAGGTTTATCAGTCCATTTGAATATGCAA  >  NZ_CP009273/4487691‑4487731

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: