Missing coverage evidence...
			seq id	start	end	size	←reads	reads→	gene	description
*	*	÷	NZ_CP009273	4487732	4487742	11	2 [0]	[0] 3	BW25113_RS22170	tyrosine‑type recombinase/integrase

CCATTAAAACAGTAATCATCCCGGGCAAATGCCCGGGAATTATTCTAGGATTATTTTCTTTGTTAAAAAAGACAAACGGTATTAACTGAT  >  NZ_CP009273/4487743‑4487832 |                                                                                          ccATTAAAACAGTAATCATCCCGGGCAAATGCCCg                                                         >  1:58005/1‑35 (MQ=255) ccATTAAAACAGTAATCATCCCGGGCAAATGCCCg                                                         <  2:58005/35‑1 (MQ=255) ccATTAAAACAGTAATCATCCCGGGCAAATGCCCGGGAATTATTCTAGGATTATTTTCTTTGTTAAAAAAGACAAACGGTATTAACTGAt  >  2:24308/1‑90 (MQ=255) |                                                                                          CCATTAAAACAGTAATCATCCCGGGCAAATGCCCGGGAATTATTCTAGGATTATTTTCTTTGTTAAAAAAGACAAACGGTATTAACTGAT  >  NZ_CP009273/4487743‑4487832

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑