Missing coverage evidence...
			seq id	start	end	size	←reads	reads→	gene	description
*	*	÷	NZ_CP009273	1188853	1188862	10	2 [1]	[0] 2	mnmA	tRNA 2‑thiouridine(34) synthase MnmA

TAAAGGAAGTAGCTCTGGTCTTTATTGCTGTCCAGACCACGCAGCAGGCGGCTCTTGCCATCGACATCGGCCCGACGTACGTAATGACCGGTAGCG  >  NZ_CP009273/1188763‑1188858                                                                                          |       taAAGGAAGTAGCTCTGGTCTTTATTGCTGTCCAGACCACGCAGCAGGCGGCTCTTGCCATCGACATCGGCCCGACGTACGTAATGACCg        <  1:513370/90‑1 (MQ=255)       aaGTAGCTCTGGTCTTTATTGCTGTCCAGACCACGCAGCAGGCGGCTCTTGCCATCGACATCGGCCCGACGTACGTAATGACCGGTAGCg  >  2:214819/1‑90 (MQ=255)                                                                                          |       TAAAGGAAGTAGCTCTGGTCTTTATTGCTGTCCAGACCACGCAGCAGGCGGCTCTTGCCATCGACATCGGCCCGACGTACGTAATGACCGGTAGCG  >  NZ_CP009273/1188763‑1188858

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 7 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑