Missing coverage evidence...
			seq id	start	end	size	←reads	reads→	gene	description
*	*	÷	NZ_CP009273	1188853	1188862	10	2 [1]	[0] 2	mnmA	tRNA 2‑thiouridine(34) synthase MnmA

AATCGGCACCTAAATCTTCGGCGGCAAATTCGAGGAAGGCTTTAAATTTGATC  >  NZ_CP009273/1188863‑1188915 |                                                     aaTCGGCACCTAAATCTTCGGCGGCAAATTCGAGGAAGGCTTTAAATTTGAtc  >  1:186367/1‑53 (MQ=255) aaTCGGCACCTAAATCTTCGGCGGCAAATTCGAGGAAGGCTTTAAATTTGAtc  <  2:186367/53‑1 (MQ=255) |                                                     AATCGGCACCTAAATCTTCGGCGGCAAATTCGAGGAAGGCTTTAAATTTGATC  >  NZ_CP009273/1188863‑1188915

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑