Missing coverage evidence...
			seq id	start	end	size	←reads	reads→	gene	description
*	*	÷	NZ_CP009273	1066750	1066815	66	2 [1]	[1] 2	rutD	pyrimidine utilization protein D

CGCGTTTGAGGGCGTTAAGTCGACGCAGTAAATTATTTTTGCCCTGAAAATGCGCCAGTGCCAGCGCGTCTTCTGCCTCCAGGCGAGGTGCGCGG  >  NZ_CP009273/1066660‑1066754                                                                                          |      cgcgTTTGAGGGCGTTAAGTCGACGCAGTAAATTATTTTTGCCCTGAAAATGCGCCAGTGCCAGCGCGTCTTCTGCCTCCAGGCGAGGTg       >  1:234267/1‑90 (MQ=255)      ttGAGGGCGTTAAGTCGACGCAGTAAATTATTTTTGCCCTGAAAATGCGCCAGTGCCAGCGCGTCTTCTGCCTCCAGGCGAGGTGCGCgg  <  2:234267/90‑1 (MQ=255)                                                                                          |      CGCGTTTGAGGGCGTTAAGTCGACGCAGTAAATTATTTTTGCCCTGAAAATGCGCCAGTGCCAGCGCGTCTTCTGCCTCCAGGCGAGGTGCGCGG  >  NZ_CP009273/1066660‑1066754

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑