Missing coverage evidence...
			seq id	start	end	size	←reads	reads→	gene	description
*	*	÷	NZ_CP009273	1797639	1797639	1	2 [0]	[0] 2	espL1	type III secretion system effector EspL1

TGCCCTTTTTACCATTAACTTTGCCACTTCACCCATCCATACAGAAAATATACTCATTACATTACAC  >  NZ_CP009273/1797572‑1797638                                                                   | tgaccTTTTTACCATTAACTTTGCCACTTCACCCATCCATACAGAAAATATACTCATTACATTacac  <  2:271364/64‑1 (MQ=255) tGCCCTTTTTACCATTAACTTTGCCACTTCACCCATCCATACAGAAAATATACTCATTACATTacac  >  1:271364/1‑67 (MQ=255)                                                                   | TGCCCTTTTTACCATTAACTTTGCCACTTCACCCATCCATACAGAAAATATACTCATTACATTACAC  >  NZ_CP009273/1797572‑1797638

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 9 ≤ ATCG/ATCG < 17 ≤ ATCG/ATCG < 29 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑