Missing coverage evidence...
			seq id	start	end	size	←reads	reads→	gene	description
*	*	÷	NZ_CP009273	1797639	1797639	1	2 [0]	[0] 2	espL1	type III secretion system effector EspL1

ATAAAAAAGAAATCATTTCCTTATTACTGGAAACCACGCCTATTAAAGCTAACCATTTGCGA  >  NZ_CP009273/1797640‑1797701 |                                                              ataAAAAAGAAATCATTTCCTTATTACTGGAAACCACGCCTATTAAAGCTAACCATTTGCGa  >  1:159568/1‑62 (MQ=255) ataAAAAAGAAATCATTTCCTTATTACTGGAAACCACGCCTATTAAAGCTAACCATTTGCGa  <  2:159568/62‑1 (MQ=255) |                                                              ATAAAAAAGAAATCATTTCCTTATTACTGGAAACCACGCCTATTAAAGCTAACCATTTGCGA  >  NZ_CP009273/1797640‑1797701

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑