| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NZ_CP009273 | = 287110 | NA (NA) | 27 (1.080) | 19/164 | 0.2 | 54.6% | intergenic (‑53/‑101) | BW25113_RS01405/BW25113_RS01410 | IS1‑like element IS1B family transposase/hypothetical protein |
| ? | NZ_CP009273 | 1902783 = | 23 (0.900) | coding (23/288 nt) | yebO | YebO family protein | |||||
GTGAACTGGCACGATTGATAAAAAACCACAAGATGAGCCCGATAAGAAGAACCACCACCGATACAACCAAAGACGCAATGTTCATCACGCCTGAATTTACAACTTCGTTCATTTCACCACCTCTGAGTAGAGGCGCTATTCTACCACTGCTGGAGAGGAAGAAAATCTAGTGCTGAA > NZ_CP009273/1902694‑1902870 | tgaacaggagggacagctgatagaaacagaagccactggagcacctcaaaaacaccatcatacactaaatcagtaagttggcagcatcac > 2:218196‑M2/90‑90 (MQ=255)gTGAACTGGCACGATTGATAAAAAACCACAAGATGAGCCCGATAAGAAGAACCACCACCGATACAACCAAATACGCAATGTTCATCACGc > 1:386330/1‑90 (MQ=255)gTGAACTGGCACGATTGATAAAAAACCACAAGATGAGCCCGATAAGAAGAACCACCACCGATACAACCAAAGACGCAATGTTCATCACGc > 1:572280/1‑90 (MQ=255)gTGAACTGGCACGATTGATAAAAAACCACAAGATGAGCCCGATAAGAAGAACCACCACCGATACAACCAAAGACGCAATGTTCATCACGc > 2:670246/1‑90 (MQ=255) tGAACTGGCACGATTGATAAAAAACCACAAGATGAGCCCGATAAGAAGAACCACCACCGATACAACCAAAGACGCAATGTTCATCACGcc > 1:120110/1‑90 (MQ=255) gaacaggagggacagctgatagaaacagaagccactggagcacctcaaaaacaccatcatacactaaatcagtaagttggcagcatcacc < 1:339161‑M2/2‑1 (MQ=255) gaacaggagggacagctgatagaaacagaagccactggagcacctcaaaaacaccatcatacactaaatcagtaagttggcagcatcacc > 2:474579‑M2/89‑90 (MQ=255) gAACTGGCACGATTGATAAAAAACCACAAGATGAGCCCGATAAGAAGAACCACCACCGATACAACCAAAGACGCAATGTTCATCACGCCt < 1:309486/90‑1 (MQ=255) aacaggagggacagctgatagaaacagaagccactggagcacctcaaaaacaccatcatacactaaatcagtaagttggcagcatcaCCt < 2:311196‑M2/3‑1 (MQ=255) acaggagggacagctgatagaaacagaagccactggagcacctcaaaaacaccatcatacactaaatcagtaagttggcagcatcaCCTg > 2:578460‑M2/87‑90 (MQ=255) gacagctgatagaaacagaagccactggagcacctcaaaaacaccatcatacactaaatcagtaagttggcagcatcaCCTGAATTTACa > 1:430717‑M2/79‑90 (MQ=255) gacagctgatagaaacagaagccactggagcacctcaaaaacaccatcatacactaaatcagtaagttggcagcatcaCCTGAATTTACa > 2:597574‑M2/79‑90 (MQ=255) cagctgatagaaacagaagccactggagcacctcaaaaacaccatcatacactaaatcagtaagttggcagcatcaCCTGAATTTACAAc > 1:278209‑M2/77‑90 (MQ=255) agctgatagaaacagaagccactggagcacctcaaaaacaccatcatacactaaatcagtaagttggcagcatcaCCTGAATTTACAACt > 1:353139‑M2/76‑90 (MQ=255) aTAAAAAACCACAAGATGAGCCCGATAAGAAGAACCACCACCGATACAACCAAAGACGCAATGTTCATCACGCCTGAATTTACAACTTCg > 1:304736/1‑90 (MQ=255) tagaaacagaagccactggagcacctcaaaaacaccatcatacactaaatcagtaagttggcagcatcaCCTGAATTTACAACTTCGTTc < 2:137516‑M2/21‑1 (MQ=255) aaaaaCCACAAGATGAGCCCGATAAGAAGAACCACCACCGATACAACCAAAGACGCAATGTTCATCACGCCTGAATTTACAACTTCGTTc < 2:572280/90‑1 (MQ=255) aaaaaCCACAAGATGAGCCCGATAAGAAGAACCACCACCGATACAACCAAAGACGCAATGTTCATCACGCCTGAATTTACAACTTCGTTc < 1:133447/90‑1 (MQ=255) aaCCACAAGATGAGCCCGATAAGAAGAACCACCACCGATACAACCAAAGACGCAATGTTCATCACGCCTGAATTTACAACTTCGTTCAtt < 2:304736/90‑1 (MQ=255) aaCCACAAGATGAGCCCGATAAGAAGAACCACCACCGATACAACCAAAGACGCAATGTTCATCACGCCTGAATTTACAACTTCGTTCAtt < 1:656373/90‑1 (MQ=255) gaagccactggagcacctcaaaaacaccatcatacactaaatcagtaagttggcagcatcaCCTGAATTTACAACTTCGTTCATTTcacc < 2:674944‑M2/29‑1 (MQ=255) gaagccactggagcacctcaaaaacaccatcatacactaaatcagtaagttggcagcatcaCCTGAATTTACAACTTCGTTCATTTcacc < 1:57125‑M2/29‑1 (MQ=255) gaagccactggagcacctcaaaaacaccatcatacactaaatcagtaagttggcagcatcaCCTGAATTTACAACTTCGTTCATTTcacc < 2:26541‑M2/29‑1 (MQ=255) caAGATGAGCCCGATAAGAAGAACCACCACCGATACAACCAAAGACGCAATGTTCATCACGCCTGAATTTACAACTTCGTTCATTTcacc < 1:376993/90‑1 (MQ=255) agccactggagcacctcaaaaacaccatcatacactaaatcagtaagttggcagcatcaCATGAATTTACAACTTCGTTCATTTcaccac > 2:436490‑M2/60‑90 (MQ=255) tGAGCCCGATAAGAAGAACCACCACCGATACAACCAAAGACGCAATGTTCATCACGCCTGAATTTACAACTTCGTTCATTTCACCACctc < 2:20610/90‑1 (MQ=255) aGCCCGATAAGAAGAACCACCACCGATACAACCAAAGACGCAATGTTCATCACGCCTGAATTTACAACTTCGTTCATTTCACCACCTCTg < 2:12574/90‑1 (MQ=255) gATAAGAAGAACCACCACCGATACAACCAAAGACGCAATGTTCATCACGCCTGAATTTACAACTTCGTTCATTTcaccac < 2:200155/80‑1 (MQ=255) gATAAGAAGAACCACCACCGATACAACCAAAGACGCAATGTTCATCACGCCTGAATTTACAACTTCGTTCATTTcaccac > 1:200155/1‑80 (MQ=255) gATAAGAAGAACCACCACCGATACAACCAAAGACGCAATGTTCATCACGCCTGAATTTACAACTTCGTTCATTTCACCACCTCTGAGTag > 1:414720/1‑90 (MQ=255) aTAAGAAGAACCACCACCGATACAACCAAAGACGCAATGTTCATCACGCCTGAATTTACAACTTCGTTCATTTCACCACCTCTGAGTaga < 2:414720/90‑1 (MQ=255) acctcaaaaacaccatcatacactaaatcagtaagttggcagcatcaCCTGAATTTACAACTTCGTTCATTTCACCACCTCTGAGTagag > 2:91394‑M2/48‑90 (MQ=255) cctcaaaaacaccatcatacactaaatcagtaagttggcagcatcaCCTGAATTTACAACTTCGTTCATTTCACCACCTCTGAGTAGAgg > 2:257650‑M2/47‑90 (MQ=255) cctcaaaaacaccatcatacactaaatcagtaagttggcagcatcaCCTGAATTTACAACTTCGTTCATTTCACCACCTCTGAGTAGAgg > 1:509815‑M2/47‑90 (MQ=255) tcaaaaacaccatcatacactaaatcagtaagttggcagcatcaCCTGAATTTACAACTTCGTTCATTTCACCACCTCTGAGTAGAGgcg < 2:724258‑M2/46‑1 (MQ=255) aaaaacaccatcatacactaaatcagtaagttggcagcatcaCCTGAATTTACAACTTCGTTCATTTCACCACCTCTGAGTAGAGGCGCt < 2:143508‑M2/48‑1 (MQ=255) catcatacactaaatcagtaagttggcagcatcaCCTGAATTTACAACTTCGTTCATTTCACCACCTCTGAGTAGAGGCGCTATTCTAcc < 2:509815‑M2/56‑1 (MQ=255) catcatacactaaatcagtaagttggcagcatcaCCTGAATTTACAACTTCGTTCATTTCACCACCTCTGAGTAGAGGCGCTATTCTAcc < 2:343870‑M2/56‑1 (MQ=255) caccGATACAACCAAAGACGCAATGTTCATCACGCCTGAATTTACAACTTCGTTCATTTCACCACCTCTGAGTAGAGGCGCTATTCTAcc < 1:425241/90‑1 (MQ=255) atcatacactaaatcagtaagttggcagcatcaCCTGAATTTACAACTTCGTTCATTTCACCACCTCTGAGTAGAGGCGCTATTCTACCa > 2:421551‑M2/34‑90 (MQ=255) gATACAACCAAAGACGCAATGTTCATCACGCCTGAATTTACAACTTCGTTCATTTCACCACCTCTGAGTAGAGGCGCTATTCTACCActg > 1:167241/1‑90 (MQ=255) ctaaatcagtaagttggcagcatcaCCTGAATTTACAACTTCGTTCATTTCACCACctc > 1:124506‑M2/26‑59 (MQ=255) ctaaatcagtaagttggcagcatcaCCTGAATTTACAACTTCGTTCATTTCACCACctc < 2:124506‑M2/34‑1 (MQ=255) aaatcagtaagttggcagcatcaCCTGAATTTACAACTTCGTTCATTTCACCACCTCTGAGTaga < 2:467782‑M2/42‑1 (MQ=255) aaatcagtaagttggcagcatcaCCTGAATTTACAACTTCGTTCATTTCACCACCTCTGAGTaga > 1:467782‑M2/24‑65 (MQ=255) aaatcagtaagttggcagcatcaCCTGAATTTACAACTTCGTTCATTTCACCACCTCTGAGTAGAGGCGCTATTCTAcc > 1:689645‑M2/24‑79 (MQ=255) aaatcagtaagttggcagcatcaCCTGAATTTACAACTTCGTTCATTTCACCACCTCTGAGTAGAGGCGCTATTCTAcc < 2:689645‑M2/56‑1 (MQ=255) aaatcagtaagttggcagcatcaCCTGAATTTACAACTTCGTTCATTTCACCACCTCTGAGTAGAGGCGCTATTCTACCACTGCTGgaga < 2:97071‑M2/67‑1 (MQ=255) cAAAGACGCAATGTTCATCACGCCTGAATTTACAACTTCGTTCATTTCACCACCTCTGAGTAGAGGCGCTATTCTACCACTGCTGGagag > 1:72801/1‑90 (MQ=255) gtaagttggcagcatcaCCTGAATTTACAACTTCGTTCATTTCACCACCTCTGAGTAGAGGCGCTATTCTACCACTGCTGGAGAGgaaga > 2:699806‑M2/18‑90 (MQ=255) tcatcaCGCCTGAATTTACAACTTCGTTCATTTCACCACCTCTGAGTAGAGGCGCTATTCTACCACTGCTGGAGAGGAAGAAAATCTAGt > 2:492067/1‑90 (MQ=255) tcatcaCGCCTGAATTTACAACTTCGTTCATTTCACCACCTCTGAGTAGAGGCGCTATTCTACCACTGCTGGAGAGGAAGAAAATCTAGt > 1:208187/1‑90 (MQ=255) cGCCTGAATTTACAACTTCGTTCATTTCACCACCTCTGAGTAGAGGCGCTATTCTACCACTGCTGGAGAGGAAGAAAATCTAGTGCTGaa > 2:59378/1‑90 (MQ=255) CCTGAATTTACAACTTCGTTCATTTCACCACCTCTGAGTAGAGgcgc < 2:60840‑M2/47‑1 (MQ=255) CCTGAATTTACAACTTCGTTCATTTCACCACCTCTGAGTAGAGgcgc > 1:60840‑M2/1‑47 (MQ=255) | GTGAACTGGCACGATTGATAAAAAACCACAAGATGAGCCCGATAAGAAGAACCACCACCGATACAACCAAAGACGCAATGTTCATCACGCCTGAATTTACAACTTCGTTCATTTCACCACCTCTGAGTAGAGGCGCTATTCTACCACTGCTGGAGAGGAAGAAAATCTAGTGCTGAA > NZ_CP009273/1902694‑1902870 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 31 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |