| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NZ_CP009273 | = 1417793 | 7 (0.240) | 23 (0.820) | 20/158 | 0.2 | 77.3% | coding (64/120 nt) | BW25113_RS26130 | hypothetical protein |
| ? | NZ_CP009273 | 2163654 = | NA (NA) | intergenic (‑4/‑63) | BW25113_RS10890/BW25113_RS10900 | DeoR/GlpR family DNA‑binding transcription regulator/IS3‑like element IS3 family transposase | |||||
GTCGTCGTCGGTTGCACATCAAAGCAGTCTGTCAGTCAGTGCGTGAAGCCACCACCGCCTCCGGCGTGGATAATGCAGCCTCCCCCCGACTG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NZ_CP009273/1417702‑1417793‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ctgATCTTACCCAGCAATAGTGGACACGCGGCTAAGTGAGTAAACTCTCAGTCAGAGGTGACTCACATGACAAAAACAGTATCAACCAGTAA > NZ_CP009273/2163654‑2163742 GTCGTCGTCGGTTGCACATCAAAGCAGTCTGTCAGTCAGTGCGTGAAGCCACCACCGCCTCCGGCGTGGATAATGCAGCCTCCCCCCGAC < 1:298674/90‑1 TTGCACTTCAAAGCAGTTTGCCAGTCAGTGCGTGAAGCCACCCCCGCCTCCGGCGTGGATAATGCAGCCTCCCCCCGACTGATCTTACCC < 2:769352/90‑1 TGCACATCAAAGCAGTCTGTCAGTCAGTGCGTGAAGCCACCACCGCCTCCGGCGTGGATAATGCAGCCTCCCCCCGACTGATCTTACCCA < 1:641686/90‑1 AAGCAGTCTGTCAGTCAGTGCGTGAAGCCACCACCGCCTCCGGCGTGGATAATGCAGCCTCCCCCCGACTGATCTTACCCAGCA < 2:783091/84‑1 AAGCAGTCTGTCAGTCAGTGCGTGAAGCCACCACCGCCTCCGGCGTGGATAATGCAGCCTCCCCCCGACTGATCTTACCCAGCA > 1:783091/1‑84 CAGTGCGTGAAGCCACCACCGCCTCCGGCGTGGATAATGCAGCCTCCCCCCGACTGATCTTACCCAGCAATAGTGGACACGCGGCTAAGT < 2:424525/90‑1 CAGTGCGTGAAGCCACCACCGCCTCCGGCGTGGATAATGCAGCCTCCCCCCGACTGATCTTACCCAGCAATAGTGGACACGCGGCTAAGT > 2:169135/1‑90 CAGAGCGTGAAGCCTCCACCGCCTCCGGCGTGGACAATGCAGCCTCCCCCCGACTGATCTTACCCAGCAATAGTGGACACGCGGCTAAGT < 2:386566/90‑1 GTGCGTGAAGCCACCACCGCCTCCGGCGTGGATAATGCAGCCTCCCCCCGACTGATCTTACCCAGCAATAGTGGACACGCGGCTAAGTGA > 2:524394/1‑90 GCGTGAAGCCACCACCGCCTCCGGCGTGGATAATGCAGCCTCCCCCCGACTGATCTTACCCAGCAA > 1:148367/1‑66 GCGTGAAGCCACCACCGCCTCCGGCGTGGATAATGCAGCCTCCCCCCGACTGATCTTACCCAGCAA < 2:148367/66‑1 CCACCACCGCCTCCGGCGTGGATAATGCAGCCTCCCCCCGACTGATCTTACCCAGCAATAGTGGACACGCG > 2:793690/1‑71 CCACCACCGCCTCCGGCGTGGATAATGCAGCCTCCCCCCGACTGATCTTACCCAGCAATAGTGGACACGCG < 1:793690/71‑1 ACCACCGCCTCCGGCGTGGATAATGCAGCCTCCCCCCGACTGATCTTACCCAGCAATAGTGGACACGCGGCTAA > 1:183353/1‑74 ACCACCGCCTCCGGCGTGGATAATGCAGCCTCCCCCCGACTGATCTTACCCAGCAATAGTGGACACGCGGCTAA < 2:183353/74‑1 GGATAATGCAGCCTCCCCCCGACTGATCTTACCCAGCAATAGTGGACACGCGGCTAAGTGAGTAAACTCTCAGTCAGAGGTGACTCACAT > 1:420211/1‑90 ATGCAGCCTCCCCCCGACTGATCTTACCCAGCAATAGTGGACACGCGGCTAAGTGAGTAAACTCTCAGTCAGAGGTGACTCACATGACA > 2:702173/1‑89 ATGCAGCCTCCCCCCGACTGATCTTACCCAGCAATAGTGGACACGCGGCTAAGTGAGTAAACTCTCAGTCAGAGGTGACTCACATGACA < 1:702173/89‑1 ATGCAGCCTCCCCCCGACTGATCTTACCCAGCAATAGTGGACACGCGGCTAAGTGAGTAAACTCTCAGTCAGAGGTGACTC > 2:468776/1‑81 ATGCAGCCTCCCCCCGACTGATCTTACCCAGCAATAGTGGACACGCGGCTAAGTGAGTAAACTCTCAGTCAGAGGTGACTC < 1:468776/81‑1 CAGCCTCCCCCCGACTGATCTTACCCAGCAATAGTGGACACGCGGCTAAGTGAGTAAACTCTCAGTCAGAGGTGACTCACATGACAAAAA < 2:266050/90‑1 AGCCTCCCCCCGACTGATCTTACCCAGCAATAGTGGACACGCGGCTAAGTGAGTAAACTCTCAGTCAGAGGTGACTCACATGACAAAAAC < 2:420211/90‑1 GCCTCCCCCCGACTGATCTTACCCAGCAATAGTGGACACGCGGCTAAGTGAGTAAACTCTCAGTCAGAGGTGACTCACATGACAAAAACA > 2:14089/1‑90 GCCTCCCCCCGACTGATCTTACCCAGCAATAGTGGACACGCGGCTAAGTGAGTAAACTCTCAGTCAGAGGTGACTCACATGACAAAAACA > 2:133806/1‑90 CTGATCTTACCCAGCAATAGTGGACACGCGGCTAAGTGAGTAAACTCTCAGTCAGAGGTGACTCACATGACAAAAACAGTATCAACCAGT > 2:160270/1‑90 GATCTTACCCAGCAATAGTGGACACGCGGCTAAGTGAGTAAACTCTCAGTCAGAGGTGACTCACATGACAAAAACAGTATCAACCAGTAA > 1:106047/1‑90 GATCTTACCCAGCAATAGTGGACACGCGGCTAAGTGAGTAAACTCTCAGTCAGAGGTGACTCACATGACAAAAACAG > 2:226093/1‑77 GATCTTACCCAGCAATAGTGGACACGCGGCTAAGTGAGTAAACTCTCAGTCAGAGGTGACTCACATGACAAAAACAG < 1:226093/77‑1 GATCTTACCCAGCAATAGTGGACACGCGGCTAAGTGAGTAAACTCTCAGTCAGAGGTGACTCACATGACAAAAAC > 2:349050/1‑75 GATCTTACCCAGCAATAGTGGACACGCGGCTAAGTGAGTAAACTCTCAGTCAGAGGTGACTCACATGACAAAAAC < 1:349050/75‑1 GTCGTCGTCGGTTGCACATCAAAGCAGTCTGTCAGTCAGTGCGTGAAGCCACCACCGCCTCCGGCGTGGATAATGCAGCCTCCCCCCGACTG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NZ_CP009273/1417702‑1417793‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ctgATCTTACCCAGCAATAGTGGACACGCGGCTAAGTGAGTAAACTCTCAGTCAGAGGTGACTCACATGACAAAAACAGTATCAACCAGTAA > NZ_CP009273/2163654‑2163742 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 18 ≤ ATCG/ATCG < 30 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |