| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NZ_CP009273 | = 1417793 | 7 (0.240) | 23 (0.820) | 20/158 | 0.2 | 77.3% | coding (64/120 nt) | BW25113_RS26130 | hypothetical protein |
| ? | NZ_CP009273 | 2163654 = | NA (NA) | intergenic (‑4/‑63) | BW25113_RS10890/BW25113_RS10900 | DeoR/GlpR family DNA‑binding transcription regulator/IS3‑like element IS3 family transposase | |||||
TCGTCGGTTGCACATCAAAGCAGTCTGTCAGTCAGTGCGTGAAGCCACCACCGCCTCCGGCGTGGATAATGCAGCCTCCCCCCGACTGGCAGACACCGCTGAACGGGATTATTTCACCCTCCGGGAACGACTGGTAATGATGCAGGCCCAACTTGAAGGTGCTCAGCAATACATAAC > NZ_CP009273/1417706‑1417882 | gttggtgtggcggcctcagtccggaacaatttgaaaacaagaacctcgcttaggcctgtgtccatattacgtgggtaggatcaGACTGGc > 2:327774‑M2/84‑90 (MQ=255) ttGCACTTCAAAGCAGTTTGCCAGTCAGTGCGTGAAGCCACCCCCGCCTCCGGCGTGGATAATGCAGCCTCCCCCCGACTGatcttaccc < 2:769352‑M1/90‑10 (MQ=255) tGCACATCAAAGCAGTCTGTCAGTCAGTGCGTGAAGCCACCACCGCCTCCGGCGTGGATAATGCAGCCTCCCCCCGACTGatcttaccca < 1:641686‑M1/90‑11 (MQ=255) gcggcctcagtccggaacaatttgaaaacaagaacctcgcttaggcctgtgtccatattacgtgggtaggatcaGACTGGCAGACACCGc < 1:531747‑M2/16‑1 (MQ=255) aaGCAGTCTGTCAGTCAGTGCGTGAAGCCACCACCGCCTCCGGCGTGGATAATGCAGCCTCCCCCCGACTGatcttacccagca < 2:783091‑M1/84‑14 (MQ=255) aaGCAGTCTGTCAGTCAGTGCGTGAAGCCACCACCGCCTCCGGCGTGGATAATGCAGCCTCCCCCCGACTGatcttacccagca > 1:783091‑M1/1‑71 (MQ=255) tcagtcagTGCGTGAAGCCACCACCGCCTCCGGCGTGGATAATGCAGCCTCCCCCCGACTGGCAGACACCGCTGAACGGGATTATTTCAc < 1:629420/90‑1 (MQ=33) aatttgaaaacaagaacctcgcttaggcctgtgtccatattacgtgggtaggatcaGACTGGCAGACACCGCTGAACGGGATTATTTCAc < 2:843389‑M2/34‑1 (MQ=255) cagtGCGTGAAGCCACCACCGCCTCCGGCGTGGATAATGCAGCCTCCCCCCGACTGatcttacccagcaatagtggacacgcggctaagt < 2:424525‑M1/90‑35 (MQ=255) cagtGCGTGAAGCCACCACCGCCTCCGGCGTGGATAATGCAGCCTCCCCCCGACTGatcttacccagcaatagtggacacgcggctaagt > 2:169135‑M1/1‑56 (MQ=255) cagaGCGTGAAGCCTCCACCGCCTCCGGCGTGGACAATGCAGCCTCCCCCCGACTGatcttacccagcaatagtggacacgcggctaagt < 2:386566‑M1/90‑35 (MQ=255) gtGCGTGAAGCCACCACCGCCTCCGGCGTGGATAATGCAGCCTCCCCCCGACTGatcttacccagcaatagtggacacgcggctaagtga > 2:524394‑M1/1‑54 (MQ=255) gCGTGAAGCCACCACCGCCTCCGGCGTGGATAATGCAGCCTCCCCCCGACTGatcttacccagcaa > 1:148367‑M1/1‑52 (MQ=255) gCGTGAAGCCACCACCGCCTCCGGCGTGGATAATGCAGCCTCCCCCCGACTGatcttacccagcaa < 2:148367‑M1/66‑15 (MQ=255) gTGAAGCCACCACCGCCTCCGGCGTGGATAATGCAGCCTCCCCCCGACTGGCAGACACCGCTGAACGGGATTATTTCACCCTCCGGGAAc < 2:251712/90‑1 (MQ=255) agaacctcgcttaggcctgtgtccatattacgtgggtaggatcaGACTGGCAGACACCGCTGAACGGGATTATTTCACCCTCCGGGAACg > 2:407543‑M2/45‑90 (MQ=255) gaacctcgcttaggcctgtgtccatattacgtgggtaggatcaGACTGGCAGACACCGCTGAACGGGATTATTTCACCCTCCGGGAACGa < 2:127475‑M2/47‑1 (MQ=255) ccaccaCCGCCTCCGGCGTGGATAATGCAGCCTCCCCCCGACTGatcttacccagcaatagtggacacgcg > 2:793690‑M1/1‑44 (MQ=255) ccaccaCCGCCTCCGGCGTGGATAATGCAGCCTCCCCCCGACTGatcttacccagcaatagtggacacgcg < 1:793690‑M1/71‑28 (MQ=255) tcgcttaggcctgtgtccatattacgtgggtaggatcaGACTGGCAGACACCGCTGAACGGGATTATTTCACCCTCCGGGAACGACTGGt > 2:253233‑M2/39‑90 (MQ=255) accaccGCCTCCGGCGTGGATAATGCAGCCTCCCCCCGACTGatcttacccagcaatagtggacacgcggctaa > 1:183353‑M1/1‑42 (MQ=255) accaccGCCTCCGGCGTGGATAATGCAGCCTCCCCCCGACTGatcttacccagcaatagtggacacgcggctaa < 2:183353‑M1/74‑33 (MQ=255) gtgtccatattacgtgggtaggatcaGACTGGCAGACACCGCTGAACGGGATTATTTCACCCTCCGGGAACGACTGGTAATGATGCAGGc > 2:86302‑M2/27‑90 (MQ=255) ggATAATGCAGCCTCCCCCCGACTGatcttacccagcaatagtggacacgcggctaagtgagtaaactctcagtcagaggtgactcacat > 1:420211‑M1/1‑25 (MQ=255) tattacgtgggtaggatcaGACTGGCAGACACCGCTGAACGGGATTATTTCACCCTCCGGGAACGACTGGTAATGATGCAGGCCCAACtt > 1:864233‑M2/20‑90 (MQ=255) tacgtgggtaggatcaGACTGGCAGACACCGCTGAACGGGATTATTTCACCCTCCGGGAACGACTGGTAATGATGCAg < 1:367735‑M2/62‑1 (MQ=255) tacgtgggtaggatcaGACTGGCAGACACCGCTGAACGGGATTATTTCACCCTCCGGGAACGACTGGTAATGATGCAg > 2:367735‑M2/17‑78 (MQ=255) tacgtgggtaggatcaGACTGGCAGACACCGCTGAACGGGATTATTTCACCCTCCGGGAACGACTGGTAATGATGCAGGCCCAACTTGaa > 1:632907‑M2/17‑90 (MQ=255) aTGCAGCCTCCCCCCGACTGatcttacccagcaatagtggacacgcggctaagtgagtaaactctcagtcagaggtgactcacatgaca < 1:702173‑M1/89‑70 (MQ=255) aTGCAGCCTCCCCCCGACTGatcttacccagcaatagtggacacgcggctaagtgagtaaactctcagtcagaggtgactcacatgaca > 2:702173‑M1/1‑20 (MQ=255) aTGCAGCCTCCCCCCGACTGatcttacccagcaatagtggacacgcggctaagtgagtaaactctcagtcagaggtgactc < 1:468776‑M1/81‑62 (MQ=255) aTGCAGCCTCCCCCCGACTGatcttacccagcaatagtggacacgcggctaagtgagtaaactctcagtcagaggtgactc > 2:468776‑M1/1‑20 (MQ=255) cAGCCTCCCCCCGACTGatcttacccagcaatagtggacacgcggctaagtgagtaaactctcagtcagaggtgactcacatgacaaaaa < 2:266050‑M1/90‑74 (MQ=255) gggtaggatcaGACTGGCAGACACCGCTGAACGGGATTATTTCACCCTCCGGGAACGACTGGTAATGATGCAGGCCCAACTTGAAGGTGc < 2:632907‑M2/79‑1 (MQ=255) aGCCTCCCCCCGACTGatcttacccagcaatagtggacacgcggctaagtgagtaaactctcagtcagaggtgactcacatgacaaaaac < 2:420211‑M1/90‑75 (MQ=255) gCCTCCCCCCGACTGatcttacccagcaatagtggacacgcggctaagtgagtaaactctcagtcagaggtgactcacatgacaaaaaca > 2:133806‑M1/1‑15 (MQ=255) gCCTCCCCCCGACTGatcttacccagcaatagtggacacgcggctaagtgagtaaactctcagtcagaggtgactcacatgacaaaaaca > 2:14089‑M1/1‑15 (MQ=255) gtaggatcaGACTGGCAGACACCGCTGAACGGGATTATTTCACCCTCCGGGAACGACTGGTAATGATGCAGGCCCAACTTGAAGGTGCTc < 1:327774‑M2/81‑1 (MQ=255) gtaggatcaGACTGGCAGACACCGCTGAACGGGATTATTTCACCCTCCGGGAACGACTGGTAATGATGCAGGCCCAACTTGAAGGTGCTc < 1:763970‑M2/81‑1 (MQ=255) ggatcaGACTGGCAGACACCGCTGAACGGGATTATTTCACCCTCCGGGAACGACTGGTAATGATGCAGGCCCAACTTGAAGGTGCTCAGc < 2:862320‑M2/84‑1 (MQ=255) atcaGACTGGCAGACACCGCTGAACGGGATTATTTCACCCTCCGGGAACGACTGGTAATGATGCAGGCCCAACTTGAAGGTGCTCAGCaa < 2:154058‑M2/86‑1 (MQ=255) gACTGGCAGACACCGCTGAACGGGATTATTTCACCCTCCGGGAACGACTGGTAATGATGCAGGccc < 2:700413/66‑1 (MQ=255) gACTGGCAGACACCGCTGAACGGGATTATTTCACCCTCCGGGAACGACTGGTAATGATGCAGGccc > 1:700413/1‑66 (MQ=255) gACTGGCAGACACCGCTGAACGGGATTATTTCACCCTCCGGGAACGACTGGTAATGATGCAGGCCCAACTTGAAGGTGCTCAGCAATACa > 2:352347/1‑90 (MQ=255) aCTGGCAGACACCGCTGAACGGGATTATTTCACCCTCCGGGAACGACTGGTAATGATGCAGGCCCAACTTGAAGGTGCTCAGCAATACAt < 2:765304/90‑1 (MQ=255) cTGatcttacccagcaatagtggacacgcggctaagtgagtaaactctcagtcagaggtgactcacatgacaaaaacagtatcaaccagt > 2:160270‑M1/1‑3 (MQ=255) ggCAGACACCGCTGAACGGGATTATTTCACCCTCCGGGAACGACTGGTAATGATGCAGGCCCAACTTGAAGGTGCTCAGCAATACATAAc > 1:636595/1‑90 (MQ=255) gatcttacccagcaatagtggacacgcggctaagtgagtaaactctcagtcagaggtgactcacatgacaaaaacagtatcaaccagtaa > 1:106047‑M1/1‑1 (MQ=255) gatcttacccagcaatagtggacacgcggctaagtgagtaaactctcagtcagaggtgactcacatgacaaaaacag > 2:226093‑M1/1‑1 (MQ=255) gatcttacccagcaatagtggacacgcggctaagtgagtaaactctcagtcagaggtgactcacatgacaaaaacag < 1:226093‑M1/77‑77 (MQ=255) gatcttacccagcaatagtggacacgcggctaagtgagtaaactctcagtcagaggtgactcacatgacaaaaac < 1:349050‑M1/75‑75 (MQ=255) gatcttacccagcaatagtggacacgcggctaagtgagtaaactctcagtcagaggtgactcacatgacaaaaac > 2:349050‑M1/1‑1 (MQ=255) | TCGTCGGTTGCACATCAAAGCAGTCTGTCAGTCAGTGCGTGAAGCCACCACCGCCTCCGGCGTGGATAATGCAGCCTCCCCCCGACTGGCAGACACCGCTGAACGGGATTATTTCACCCTCCGGGAACGACTGGTAATGATGCAGGCCCAACTTGAAGGTGCTCAGCAATACATAAC > NZ_CP009273/1417706‑1417882 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 20 ≤ ATCG/ATCG < 31 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |