| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NZ_CP009273 | = 3575348 | 0 (0.000) | 30 (1.290) | 19/170 | 0.2 | 100% | coding (126/1179 nt) | hcp | Hcp1 family type VI secretion system effector |
| ? | NZ_CP009273 | 3576788 = | NA (NA) | coding (391/417 nt) | BW25113_RS17825 | YrhA family protein | |||||
GCATCTCCGCAGGTTGTGGGACTTCTGAGTCTACAGGTAATCGTTGGCAGAGCGGGCATGAGGATGAAATATTTACATTC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NZ_CP009273/3575269‑3575348‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑GGTGATGCTGCCAACTTACTGATTTAGTGTATGATGGTGTTTTTGAGGTGCTCCAGTGGCTTCTGTTTCTATCAGCTGTCCCTCCT > NZ_CP009273/3576788‑3576873 GCATCTCCGCAGGTTGTGGGACTTCTGAGTCTACAGGTAATCGTTGGCAGAGCGGGCATGAGGATGAAATATTTACATTCGGTGATGCTG > 1:51723/1‑90 TCTCCGCAGGTTGTGGGACTTCTGAGTCTACAGGTAATCGTTGGCAGAGCGGGCATGAGGATGAAATATTTACATTCGGTGATGCTGCCA < 1:407626/90‑1 CAGGTTGTGGGACTTCTGAGTCTACAGGTAATCGTTGGCAGAGCGGGCATGAGGATGAAATATTTACATTCGGTGATGCTGCCAACTTAC < 2:320369/90‑1 CAGGTTGTGGGACTTCTGAGTCTACAGGTAATCGTTGGCAGAGCGGGCATGAGGATGAAATATTTACATTCGGTGATGCTGCCAACTTAC < 2:581216/90‑1 CAGGTTGTGGGACTTCTGAGTCTACAGGTAATCGTTGGCAGAGCGGGCATGAGGATGAAATATTTACATTCGGTGATGCTGCCAACTTAC < 2:296260/90‑1 CAGGTTGTGGGACTTCTGAGTCTACAGGTAATCGTTGGCAGAGCGGGCATGAGGATGAAATATTTACATTCGGTGATGCTGCCAACTTAC < 2:358956/90‑1 GTGGGACTTCTGAGTCTACAGGTAATCGTTGGCAGAGCGGGCATGAGGATGAAATATTTACATTCGGTGATGCTGCCAACTTACTGATTT < 1:120204/90‑1 GTGGGACTTCTGAGTCTACAGGTAATCGTTGGCAGAGCGGGCATGAGGATGAAATATTTACATTCGGTGATGCTGCCAACTTACTGATTT < 1:644081/90‑1 GTGGGACTTCTGAGTCTACAGGTAATCGTTGGCAGAGCGGGCATGAGGATGAAATATTTACATTCGGTGATGCTGCCAACTTACTGATTT < 1:531750/90‑1 GGGACTTCTGAGTCTACAGGTAATCGTTGGCAGAGCGGGCATGAGGATGAAATATTTACATTCGGTGATGCTGCCAACTTACTGATTTAG < 1:104793/90‑1 CTTCTGAGTCTACAGGTAATCGTTGGCAGAGCGGGCATGAGGATGAAATATTTACATTCGGTGATGCTGCCAACTTACTGATTTAGTGTA > 2:507713/1‑90 CTTCTGAGTCTACAGGTAATCGTTGGCAGAGCGGGCATGAGGATGAAATATTTACATTCGGTGATGCTGCCAACTTACTGATTT < 1:414969/84‑1 CTTCTGAGTCTACAGGTAATCGTTGGCAGAGCGGGCATGAGGATGAAATATTTACATTCGGTGATGCTGCCAACTTACTGATTT > 2:414969/1‑84 CTTCTGAGTCTACAGGGAATCGTTGGCAGAGCGGGGATGGGGATGAAATATTTACATTCGGTGATGCTGCCAACTTACTGATTTAGTGTA > 1:320521/1‑90 GTCTACAGGTAATCGTTGGCAGAGCGGGCATGAGGATGAAATATTTACATTCGGTGATGCTGCCAACTTACTGATTTAGTGTATGATGGT < 1:491073/90‑1 GTCTACAGGTAATCGTTGGCAGAGCGGGCATGAGGATGAAATATTTACATTCGGTGATGCTGCCAACTTACTGATTTAGTGTATGATGGT < 2:366697/90‑1 CAGGTAATCGTTGGCAGAGCGGGCATGAGGATGAAATATTTACATTCGGTGATGCTGCCAACTTACTGATTTAGTGTATGATGGTGTTTT > 1:433743/1‑90 AATCGTTGGCAGAGCGGGCATGAGGATGAAATATTTACATTCGGTGATGCTGCCAACTTACTGATTTAGTGTATGATGGTGTTTTTGAGG > 2:254302/1‑90 ATCGTTGGCAGAGCGGGCATGAGGATGAAATATTTACATTCGGTGATGCTGCCAACTTACTGATTTAGTGTATGATGGTGTTTTTGAGGT < 2:425479/90‑1 ATCGTTGGCAGAGCGGGCATGAGGATGAAATATTTACATTCGGTGATGCTGCCAACTTACTGATTTAGTGTATGATGGTGTTTTTGAGGT < 2:18713/90‑1 CGTTGGCAGAGCGGGCATGAGGATGAAATATTTACATTCGGTGATGCTGCCAACTTACTGATTTAGTGTATGATGGTGTTTTTGAGGTGC < 2:267168/90‑1 TGGCAGAGCGGGCATGAGGATGAAATATTTACATTCGGTGATGCTGCCAACTTACTGATTTAGTGTATGATGGTGTTTTTGAGGTGCTCC > 1:317348/1‑90 GGCAGAGCGGGCATGAGGATGAAATATTTACATTCGGTGATGCTGCCAACTTACTGATTTAGTGTATGATGGTGTTTTTGAGGTGCTCCA > 2:610503/1‑90 GAGCGGGCATGAGGATGAAATATTTACATTCGGTGATGCTGCCAACTTAGTGATTTAGTGGATGGTGGTGTTTTTGAGGGGCGCCAGTGG > 1:299518/1‑90 AGCGGGCATGAGGATGAAATATTTACATTCGGTGATGCTGCCAACTTACTGATTTAGTGTATGATGGTGTTTTTGAGGTGCTCCAGTGGC > 1:335510/1‑90 GGGCATGAGGATGAAATATTTACATTCGGTGATGCTGCCAACTTACTGATTTAGTGTATGATGGTGTTTTTGAGGTGCTCCAGTGGCTTC < 2:389977/90‑1 TGAGGATGAAATATTTACATTCGGTGATGCTGCCAACTTACTGATTTAGTGTATGATGGTGTTTTTGAGGTGCTCCAGTGGCTTCTGTTT < 2:433743/90‑1 TGAAATATTTACATTCGGTGATGCTGCCAACTTACTGATTTAGTGTATGATGGTGTTTTTGAGGTGCTCCAGTGGCTTCTGTTTCTATCA > 2:548692/1‑90 TTACATTCGGTGATGCTGCCAACTTACTGATTTAGTGTATGATGGTGTTTTTGAGGTACTCCAGTGGCTTCTGTTTCTATCAGCTGTCCC > 1:120614/1‑90 ATTCGGTGATGCTGCCAACTTACTGATTTAGTGTATGATGGTGTTTTTGAGGTGCTCCAGTGGCTTCTGTTTCTATCAGCTGTCCCTCCT < 1:62499/90‑1 GCATCTCCGCAGGTTGTGGGACTTCTGAGTCTACAGGTAATCGTTGGCAGAGCGGGCATGAGGATGAAATATTTACATTC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NZ_CP009273/3575269‑3575348‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑GGTGATGCTGCCAACTTACTGATTTAGTGTATGATGGTGTTTTTGAGGTGCTCCAGTGGCTTCTGTTTCTATCAGCTGTCCCTCCT > NZ_CP009273/3576788‑3576873 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |