| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NZ_CP009273 | = 3575348 | 0 (0.000) | 30 (1.290) | 19/170 | 0.2 | 100% | coding (126/1179 nt) | hcp | Hcp1 family type VI secretion system effector |
| ? | NZ_CP009273 | 3576788 = | NA (NA) | coding (391/417 nt) | BW25113_RS17825 | YrhA family protein | |||||
GCATCTCCGCAGGTTGTGGGACTTCTGAGTCTACAGGTAATCGTTGGCAGAGCGGGCATGAGGATGAAATATTTACATTCTCACTCTTAAATAATATTAATAATACGGGGCTTGGTTCACAGTTCCATGGTATAACATTTTGTAAATTAATTGATAAAAGCACTCC > NZ_CP009273/3575269‑3575434 | gCATCTCCGCAGGTTGTGGGACTTCTGAGTCTACAGGTAATCGTTGGCAGAGCGGGCATGAGGATGAAATATTTACATTCggtgatgctg > 1:51723‑M1/1‑80 (MQ=255) tctcCGCAGGTTGTGGGACTTCTGAGTCTACAGGTAATCGTTGGCAGAGCGGGCATGAGGATGAAATATTTACATTCggtgatgctgcca < 1:407626‑M1/90‑14 (MQ=255) cAGGTTGTGGGACTTCTGAGTCTACAGGTAATCGTTGGCAGAGCGGGCATGAGGATGAAATATTTACATTCggtgatgctgccaacttac < 2:320369‑M1/90‑20 (MQ=255) cAGGTTGTGGGACTTCTGAGTCTACAGGTAATCGTTGGCAGAGCGGGCATGAGGATGAAATATTTACATTCggtgatgctgccaacttac < 2:581216‑M1/90‑20 (MQ=255) cAGGTTGTGGGACTTCTGAGTCTACAGGTAATCGTTGGCAGAGCGGGCATGAGGATGAAATATTTACATTCggtgatgctgccaacttac < 2:296260‑M1/90‑20 (MQ=255) cAGGTTGTGGGACTTCTGAGTCTACAGGTAATCGTTGGCAGAGCGGGCATGAGGATGAAATATTTACATTCggtgatgctgccaacttac < 2:358956‑M1/90‑20 (MQ=255) gtgGGACTTCTGAGTCTACAGGTAATCGTTGGCAGAGCGGGCATGAGGATGAAATATTTACATTCggtgatgctgccaacttactgattt < 1:120204‑M1/90‑26 (MQ=255) gtgGGACTTCTGAGTCTACAGGTAATCGTTGGCAGAGCGGGCATGAGGATGAAATATTTACATTCggtgatgctgccaacttactgattt < 1:644081‑M1/90‑26 (MQ=255) gtgGGACTTCTGAGTCTACAGGTAATCGTTGGCAGAGCGGGCATGAGGATGAAATATTTACATTCggtgatgctgccaacttactgattt < 1:531750‑M1/90‑26 (MQ=255) gggACTTCTGAGTCTACAGGTAATCGTTGGCAGAGCGGGCATGAGGATGAAATATTTACATTCggtgatgctgccaacttactgatttag < 1:104793‑M1/90‑28 (MQ=255) cTTCTGAGTCTACAGGTAATCGTTGGCAGAGCGGGCATGAGGATGAAATATTTACATTCggtgatgctgccaacttactgatttagtgta > 2:507713‑M1/1‑59 (MQ=255) cTTCTGAGTCTACAGGTAATCGTTGGCAGAGCGGGCATGAGGATGAAATATTTACATTCggtgatgctgccaacttactgattt < 1:414969‑M1/84‑26 (MQ=255) cTTCTGAGTCTACAGGTAATCGTTGGCAGAGCGGGCATGAGGATGAAATATTTACATTCggtgatgctgccaacttactgattt > 2:414969‑M1/1‑59 (MQ=255) cTTCTGAGTCTACAGGGAATCGTTGGCAGAGCGGGGATGGGGATGAAATATTTACATTCggtgatgctgccaacttactgatttagtgta > 1:320521‑M1/1‑59 (MQ=255) gTCTACAGGTAATCGTTGGCAGAGCGGGCATGAGGATGAAATATTTACATTCggtgatgctgccaacttactgatttagtgtatgatggt < 1:491073‑M1/90‑39 (MQ=255) gTCTACAGGTAATCGTTGGCAGAGCGGGCATGAGGATGAAATATTTACATTCggtgatgctgccaacttactgatttagtgtatgatggt < 2:366697‑M1/90‑39 (MQ=255) cAGGTAATCGTTGGCAGAGCGGGCATGAGGATGAAATATTTACATTCggtgatgctgccaacttactgatttagtgtatgatggtgtttt > 1:433743‑M1/1‑47 (MQ=255) aaTCGTTGGCAGAGCGGGCATGAGGATGAAATATTTACATTCggtgatgctgccaacttactgatttagtgtatgatggtgtttttgagg > 2:254302‑M1/1‑42 (MQ=255) aTCGTTGGCAGAGCGGGCATGAGGATGAAATATTTACATTCggtgatgctgccaacttactgatttagtgtatgatggtgtttttgaggt < 2:425479‑M1/90‑50 (MQ=255) aTCGTTGGCAGAGCGGGCATGAGGATGAAATATTTACATTCggtgatgctgccaacttactgatttagtgtatgatggtgtttttgaggt < 2:18713‑M1/90‑50 (MQ=255) cGTTGGCAGAGCGGGCATGAGGATGAAATATTTACATTCggtgatgctgccaacttactgatttagtgtatgatggtgtttttgaggtgc < 2:267168‑M1/90‑52 (MQ=255) tGGCAGAGCGGGCATGAGGATGAAATATTTACATTCggtgatgctgccaacttactgatttagtgtatgatggtgtttttgaggtgctcc > 1:317348‑M1/1‑36 (MQ=255) ggCAGAGCGGGCATGAGGATGAAATATTTACATTCggtgatgctgccaacttactgatttagtgtatgatggtgtttttgaggtgctcca > 2:610503‑M1/1‑35 (MQ=255) gagCGGGCATGAGGATGAAATATTTACATTCggtgatgctgccaacttagtgatttagtggatggtggtgtttttgaggggcgccagtgg > 1:299518‑M1/1‑31 (MQ=255) agCGGGCATGAGGATGAAATATTTACATTCggtgatgctgccaacttactgatttagtgtatgatggtgtttttgaggtgctccagtggc > 1:335510‑M1/1‑30 (MQ=255) gggCATGAGGATGAAATATTTACATTCggtgatgctgccaacttactgatttagtgtatgatggtgtttttgaggtgctccagtggcttc < 2:389977‑M1/90‑64 (MQ=255) tGAGGATGAAATATTTACATTCggtgatgctgccaacttactgatttagtgtatgatggtgtttttgaggtgctccagtggcttctgttt < 2:433743‑M1/90‑69 (MQ=255) tGAAATATTTACATTCggtgatgctgccaacttactgatttagtgtatgatggtgtttttgaggtgctccagtggcttctgtttctatca > 2:548692‑M1/1‑16 (MQ=255) ttACATTCggtgatgctgccaacttactgatttagtgtatgatggtgtttttgaggtactccagtggcttctgtttctatcagctgtccc > 1:120614‑M1/1‑8 (MQ=255) aTTCggtgatgctgccaacttactgatttagtgtatgatggtgtttttgaggtgctccagtggcttctgtttctatcagctgtccctcct < 1:62499‑M1/90‑87 (MQ=255) | GCATCTCCGCAGGTTGTGGGACTTCTGAGTCTACAGGTAATCGTTGGCAGAGCGGGCATGAGGATGAAATATTTACATTCTCACTCTTAAATAATATTAATAATACGGGGCTTGGTTCACAGTTCCATGGTATAACATTTTGTAAATTAATTGATAAAAGCACTCC > NZ_CP009273/3575269‑3575434 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |