| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NZ_CP009273 | 3816618 = | 51 (2.200) | 3 (0.130) | 3/164 | 1.9 | 6.7% | coding (859/2109 nt) | spoT | bifunctional GTP diphosphokinase/guanosine‑3',5'‑bis pyrophosphate 3'‑pyrophosphohydrolase |
| ? | NZ_CP009273 | 3816703 = | 34 (1.520) | coding (944/2109 nt) | spoT | bifunctional GTP diphosphokinase/guanosine‑3',5'‑bis pyrophosphate 3'‑pyrophosphohydrolase | |||||
| Rejected: Frequency below/above cutoff threshold. | |||||||||||
ATGGACATCTACGCTTTCCGCGTGATCGTCAATGATTCTGACACCTGTTATCGCGTGCTGGGCCAGATGCACAGCCTGTACAAG‑CCGCGTCCGGGCCGCGTGAAAGACTATATCGCCATTCCAAAAGCGAACGGCTATCAGTCTTTGCACACCTCGATGATCGGCCCGCACGGTGTG > NZ_CP009273/3816531‑3816707 | tgctctttataagcccagtgcgcggcaacacccatctccgccatctggtccatatcttcggtacggatctggacctcaaccggcacacCg < 1:307389‑M1/2‑1 (MQ=255)aTGGACATCTACGCTTTCCGCGTGATCGTCAATGATTCTGACACCTGTTATCGCGTGCTGGGCCAGATGCACAGCCTGTACAAG‑CCGCGt > 1:370398/1‑90 (MQ=255) aTCTACGCTTTCCGCGTGATCGTCAATGATTCTGACACCTGTTATCGCGTGCTGGGCCAGATGCACAGCCTGTACAAG‑CCGCGTCCGGGc < 2:458194/90‑1 (MQ=255) aTCTACGCTTTCCGCGTGATCGTCAATGATTCTGACACCTGTTATCGCGTGCTGGGCCAGATGCACAGCCTGTACAAG‑CCGCGTCCGGGc < 1:426027/90‑1 (MQ=255) tCTACGCTTTCCGCGTGATCGTCAATGATTCTGACACCTGTTATCGCGTGCTGGGCCAGATGCACAGCCTGTACAAG‑CCGCGTCCGGGcc > 1:136679/1‑90 (MQ=255) tCTACGCTTTCCGCGTGATCGTCAATGATTCTGACACCTGTTATCGCGTGCTGGGCCAGATGCACAGCCTGTACAAG‑CCGCGTCCGGGcc > 2:359473/1‑90 (MQ=255) tCTACGCTTTCCGCGTGATCGTCAATGATTCTGACACCTGTTATCGCGTGCTGGGCCAGATGCACAGCCTGTACAAG‑CCGCGTCCGGGcc > 2:283094/1‑90 (MQ=255) tCTACGCTTTCCGCGTGATCGTCAATGATTCTGACACCTGTTATCGCGTGCTGGGCCAGATGCACAGCCTGTACAAG‑CCGCGTCCGGGcc > 2:202186/1‑90 (MQ=255) tCTACGCTTTCCGCGTGATCGTCAATGATTCTGACACCTGTTATCGCGTGCTGGGCCAGATGCACAGCCTGTACAAG‑CCGCGTCCGGGcc > 2:40174/1‑90 (MQ=255) tCTACGCTTTCCGCGTGATCGTCAATGATTCTGACACCTGTTATCGCGTGCTGGGCCAGATGCACAGCCTGTACAAG‑CCGCGTCCGGGcc > 1:541514/1‑90 (MQ=255) tCTACGCTTTCCGCGTGATCGTCAATGATTCTGACACCTGTTATCGCGTGCTGGGCCAGATGCACAGCCTGTACAAG‑CCGCGTCCGGGcc > 1:539338/1‑90 (MQ=255) cTACGCTTTCCGCGTGATCGTCAATGATTCTGACACCTGTTATCGCGTGCTGGGCCAGATGCACAGCCTGTACAAG‑CCGCGTCCGGGCcg < 2:600891/90‑1 (MQ=255) ttCCGCGTGATCGTCAATGATTCTGACACCTGTTATCGCGTGCTGGGCCAGATGCACAGCCTGTACAAG‑CCGCGTCCGGGCCGCGTGaaa > 2:153812/1‑90 (MQ=255) ttCCGCGTGATCGTCAATGATTCTGACACCTGTTATCGCGTGCTGGGCCAGATGCACAGCCTGTACAAG‑CCGCGTCCGGGCCGCGTGaaa > 2:553304/1‑90 (MQ=255) ttCCGCGTGATCGTCAATGATTCTGACACCTGTTATCGCGTGCTGGGCCAGATGCACAGCCTGTACAAG‑CCGCGTCCGGGCCGCGTGaaa > 2:22153/1‑90 (MQ=255) ttCCGCGTGATCGTCAATGATTCTGACACCTGTTATCGCGTGCTGGGCCAGATGCACAGCCTGTACAAG‑CCGCGTCCGGGCCGCGTGaaa > 2:606848/1‑90 (MQ=255) tCCGCGTGACCGTCAATGATTCTGACACCTGTTATCGCGTGCTGGGCCAGATGCACAGCCTGTACAAG‑CCGCGTCCGGGCCGCGTGAAAg < 1:395900/90‑1 (MQ=255) ccGCGTGATCGTCAATGATTCTGACACCTGTTATCGCGTGCTGGGCCAGATGCACAGCCTGTACAAG‑CCGCGTCCGGGCCGCGTGAAAGa < 2:541506/90‑1 (MQ=255) gATCGTCAATGATTCTGACACCTGTTATCGCGTGCTGGGCCAGATGCACAGCCTGTACAAG‑CCGCGTCCGGGCCGCGTGAAAGACTatat > 2:381703/1‑90 (MQ=255) tGACACCTGTTATCGCGTGCTGGGCCAGATGCACAGCCTGTACAAG‑CCGCGTCCGGGCCGCGTGAAAGACTATATCGCCATTCCAAAAGc > 2:363361/1‑90 (MQ=255) gACACCTGTTATCGCGTGCTGGGCCAGATGCACAGCCTGTACAAG‑CCGCGTCCGGGCCGCGTGAAAGACTATATCGCCATTCCAAAAGCg > 2:469028/1‑90 (MQ=255) ccTGTTATCGCGTGCTGGGCCAGATGCACAGCCTGTACAAG‑CCGCGTCCGGGCCGCGTGAAAGACTATATCGCCATTCCAAAAGCGAACg > 1:377739/1‑90 (MQ=255) ccTGTTATCGCGTGCTGGGCCAGATGCACAGCCTGTACAAG‑CCGCGTCCGGGCCGCGTGAAAGACTATATCGCCATTCCAAAAGCGAACg < 2:458131/90‑1 (MQ=255) cTGTTATCGCGTGCTGGGCCAGATGCACAGCCTGTACAAG‑CCGCGTCCGGGCCGCGTGAAAGACTATATCGCCATTCCAAAAGCGAACgg > 1:165724/1‑90 (MQ=255) cTGTTATCGCGTGCTGGGCCAGATGCACAGCCTGTACAAG‑CCGCGTCCGGGCCGCGTGAAAGACTATATCGCCATTCCAAAAGCGAACgg > 2:456504/1‑90 (MQ=255) tGTTATCGCGTGCTGGGCCAGATGCACAGCCTGTACAAG‑CCGCGTCCGGGCCGCGTGAAAGACTATATCGCCATTCCAAAAGCGAACGGc > 1:429697/1‑90 (MQ=255) tATCGCGTGCTGGGCCAGATGCACAGCCTGTACAAG‑CCGCGTCCGGGCCGCGTGAAAGACTATATCGCCATTCCAAAAGCGAACGGCTAt < 2:1182/90‑1 (MQ=255) tCGCGTGCTGGGCCAGATGCACAGCCTGTACAAG‑CCGCGTCCGGGCCGCGTGAGAGACTATATCGCCATTCCAAAAGCGGACGGCTATCa < 1:368093/90‑1 (MQ=255) cgcgTGCTGGGCCAGATGCACAGCCTGTACAAGCCCGCGTCCGGGCCGCGTGAAAGACTATATCGCCATTCCAAAAGCGAACGGCTATCa < 1:349489/90‑1 (MQ=255) tatcttcggtacggatctggacctcaaccggcacacCGTCCGGGCCGCGTGAAAGACTATATCGCCATTCCAAAAGCGAACGGCTATCAg < 1:514687‑M1/54‑1 (MQ=255) gcgTGCTGGGCCAGATGCACAGCCTGTACAAG‑CCGCGTCCGGGCCGCGTGAAAGACTATATCGCCATTCCAAAAGCGAACGGCTATCAGt < 1:443248/90‑1 (MQ=255) cgTGCTGGGCCAGATGCACAGCCTGTACAAG‑CCGCGTCCGGGCCGCGTGAAAGACTATATCGCCATTCCAAAAGCGAACGGCTATCAGTc > 1:452490/1‑90 (MQ=255) gTGCTGGGCCAGATGCACAGCCTGTACAAG‑CCGCGTCCGGGCCGCGTGAAAGa > 1:254797/1‑53 (MQ=255) gTGCTGGGCCAGATGCACAGCCTGTACAAG‑CCGCGTCCGGGCCGCGTGAAAGa < 2:254797/53‑1 (MQ=255) gTGCTGGGCCAGATGCACAGCCTGTACAAG‑CCGCGTCCGGGCCGCGTGAAAGACTATATCGCCATTCCAAAAGCGAACGGCTATCAGTCt > 1:188368/1‑90 (MQ=255) gCTGGGCCAGATGCACAGCCTGTACAAG‑CCGCGTCCGGGCCGCGTGAAAGACTATATCGCCATTCCAAAAGCGAACGGCTATCAGTCttt > 1:238230/1‑90 (MQ=255) ggtacggatctggacctcaaccggcacacCGTCCGGGCCGCGTGAAAGACTATATCGCCATTCCAAAAGCGAACGGCTATCAGTCTTTGc < 2:398739‑M1/61‑1 (MQ=255) ggCCAGATGCACAGCCTGTACAAG‑CCGCGTCCGGGCCGCGTGAAAGACTATATCGCCATTCCAAAAGCGAACGGCTATCAGTCTTTGcac < 2:165724/90‑1 (MQ=255) ggCCAGATGCACAGCCTGTACAAG‑CCGCGTCCGGGCCGCGTGAAAGACTATATCGCCATTCCAAAAGCGAACGGCTATCAGTCTTTGcac < 1:40174/90‑1 (MQ=255) ggCCAGATGCACAGCCTGTACAAG‑CCGCGTCCGGGCCGCGTGAAAGACTATATCGCCATTCCAAAAGCGAACGGCTATCAGTCTTTGcac < 1:469028/90‑1 (MQ=255) ctggacctcaaccggcacacCGTGCGGGCCGCGTGAAAGACTATATCGCCATTCCAAAAGCGAACGGCTATCAGTCTTTGCACACCTCga < 2:494371‑M1/70‑1 (MQ=255) gCCTGTACAAG‑CCGCGTCCGGGCCGCGCGAAAGACTATATCGCCATTCCAAAAGCGAACGGCTATCAGTCTTTGCACACCTCGATGATCg > 2:341361/1‑90 (MQ=255) gTACAAG‑CCGCGTCCGGGCCGCGTGAAAGACTATATCGCCATTCCAAAAGCGAACGGCTATCAGTCTTTGc > 2:640218/1‑71 (MQ=255) gTACAAG‑CCGCGTCCGGGCCGCGTGAAAGACTATATCGCCATTCCAAAAGCGAACGGCTATCAGTCTTTGc < 1:640218/71‑1 (MQ=255) gTACAAG‑CCGCATCCGGGCCGCGTGAAAGACTATATCGCCATTCCAAAAGCGAACGGCTATCAGTCTTTGCACACCTCGATGATCGGccc > 1:151725/1‑90 (MQ=255) aCAAG‑CCGCGTCCGGGCCGCGTGAAAGACTATATCGCCATTCCAAAAGCGAACGGCTATCAGTCTTTGCACACCTCGATGATCGGCCCGc < 2:635192/90‑1 (MQ=255) aaG‑CCGCGTCCGGGCCGCGTGAAAGACTATATCGCCATTCCAAAAGCGAACGGCTATCAGTCTTTGCACACCTCGATGATCGGCCCGCAc < 2:539338/90‑1 (MQ=255) aaG‑CCGCGTCCGGGCCGCGTGAAAGACTATATCGCCATTCCAAAAGCGAACGGCTATCAGTCTTTGCACACCTCGATGATCGGCCCGCAc < 2:541514/90‑1 (MQ=255) aaG‑CCGCGTCCGGGCCGCGTGAAAGACTATATCGCCATTCCAAAAGCGAACGGCTATCAGTCTTTGCACACCTCGATGATCGGCCCGCAc < 1:310245/90‑1 (MQ=255) aaG‑CCGCGTCCGGGCCGCGTGAAAGACTATATCGCCATTCCAAAAGCGAACGGCTATCAGTCTTTGCACACCTCGATGATCGGCCCGCAc < 1:283094/90‑1 (MQ=255) aaG‑CCGCGTCCGGGCCGCGTGAAAGACTATATCGCCATTCCAAAAGCGAACGGCTATCAGTCTTTGCACACCTCGATGATCGGCCCGCAc > 2:343960/1‑90 (MQ=255) aG‑CCGCGTCCGGGCCGCGTGAAAGACTATATCGCCATTCCAAAAGCGGACGGCTATCAGTCTTTGCACACCTCGATGATCGGCCCGCACg < 1:550939/90‑1 (MQ=255) g‑CCGCGTCCGGGCCGCGTGAAAGACTATATCGCCATTCCAAAAGCGaa > 1:592230/1‑48 (MQ=255) g‑CCGCGTCCGGGCCGCGTGAAAGACTATATCGCCATTCCAAAAGCGaa < 2:592230/48‑1 (MQ=255) g‑CCGCGTCCGGGCCGCGTGAAAGACTATATCGCCATTCCAAAAGCGAACGGCTATCAGTCTTTGCACACCTCGATGATCGGCCCGCACgg > 1:101183/1‑90 (MQ=255) CGTCCGGGCCGCGTGAAAGACTATATCGCCATTCCAAAAGCGAACGGCTATCAGTCTTTGCACACCTCGATGATCGGCCCGCACGGtgtg < 2:218476‑M1/90‑1 (MQ=255) CGTCCGGGCCGCGTGAAAGACTATATCGCCATTCCAAAAGCGAACGGCTATCAGTCTTTGCACACCTCGATGATCGGCCCGCACGGtgtg < 2:320980‑M1/90‑1 (MQ=255) CGTCCGGGCCGCGTGAAAGACTATATCGCCATTCCAAAAGCGAACGGCTATCAGTCTTTGCACACCTCGATGATCGGCCCGCACGGtgtg < 2:554005‑M1/90‑1 (MQ=255) | ATGGACATCTACGCTTTCCGCGTGATCGTCAATGATTCTGACACCTGTTATCGCGTGCTGGGCCAGATGCACAGCCTGTACAAG‑CCGCGTCCGGGCCGCGTGAAAGACTATATCGCCATTCCAAAAGCGAACGGCTATCAGTCTTTGCACACCTCGATGATCGGCCCGCACGGTGTG > NZ_CP009273/3816531‑3816707 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 20 ≤ ATCG/ATCG < 29 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |