| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NZ_CP009273 | = 3575348 | 0 (0.000) | 42 (1.630) | 30/168 | 0.0 | 100% | coding (126/1179 nt) | hcp | Hcp1 family type VI secretion system effector |
| ? | NZ_CP009273 | 3576788 = | NA (NA) | coding (391/417 nt) | BW25113_RS17825 | YrhA family protein | |||||
ACAAGGAAGCATCTCCGCAGGTTGTGGGACTTCTGAGTCTACAGGTAATCGTTGGCAGAGCGGGCATGAGGATGAAATATTTACATTC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NZ_CP009273/3575261‑3575348‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑GGTGATGCTGCCAACTTACTGATTTAGTGTATGATGGTGTTTTTGAGGTGCTCCAGTGGCTTCTGTTTCTATCAGCTGTCCCTCCTGTT > NZ_CP009273/3576788‑3576876 ACAAGGAAGCATCTCCGCAGGTTGTGGGACTTCTGAGTCTACAGGTAATCGTTGGCAGAGCGGGCATGAGGATGAAATATTTACATTCGG > 2:215799/1‑90 AGGAAGCATCTCCGCAGGTTGTGGGACTTCTGAGTCTACAGGTAATCGTTGGCAGAGCGGGCATGAGGATGAAATATTTACATTCGGTGA > 1:452706/1‑90 GCATCTCCGCAGGTTGTGGGACTTCTGAGTCTACAGGTAATCGTTGGCAGAGCGGGCATGAGGATGAAATATTTACATTCGGTGATGCTG > 1:93126/1‑90 ATCTCCGCAGGTTGTGGGACTTCTGAGTCTACAGGTAATCGTTGGCAGAGCGGGCATGAGGATGAAATATTTACATTCGGTGATGCTGCC > 2:311064/1‑90 CAGGTTGTGGGACTTCTGAGTCTACAGGTAATCGTTGGCAGAGCGGGCATGAGGATGAAATATTTACATTCGGTGATGCTGCCAACTTAC < 2:221928/90‑1 TTGTGGGACTTCTGAGTCTACAGGTAATCGTTGGCAGAGCGGGCATGAGGATGAAATATTTACATTCGGTGATGCTGCCAACTTACTGAT > 1:703472/1‑90 TGTGGGACTTCTGAGTCTACAGGTAATCGTTGGCAGAGCGGGCATGAGGATGAAATATTTACATTCGGTGATGCTGCCAACTTACTGATT > 1:112186/1‑90 TGTGGGACTTCTGAGTCTACAGGTAATCGTTGGCAGAGCGGGCATGAGGATGAAATATTTACATTCGGTGATGCTGCCAACTTACTGATT < 1:114035/90‑1 GGGACTTCTGAGTCTACAGGTAATCGTTGGCAGAGCGGGCATGAGGATGAAATATTTACATTCGGTGATGCTGCCAACTTACTGATTTAG < 1:136533/90‑1 TCTGAGTCTACAGGTAATCGTTGGCAGAGCGGGCATGAGGATGAAATATTTACATTCGGTGATGCTGCCAACTTACTGATTTAGTGTATG > 2:189865/1‑90 GTCTACAGGTAATCGTTGGCAGAGCGGGCATGAGGATGAAATATTTACATTCGGTGATGCTGCCAACTTACTGATTTAGTGTATGATGGT < 1:581233/90‑1 CTACAGGTAATCGTTGGCAGAGCGGGCATGAGGATGAAATATTTACATTCGGTGATGCTGCCAACTTAC < 1:10572/69‑1 CTACAGGTAATCGTTGGCAGAGCGGGCATGAGGATGAAATATTTACATTCGGTGATGCTGCCAACTTAC > 2:10572/1‑69 TACAGGTAATCGTTGGCAGAGCGGGCATGAGGATGAAATATTTACATTCGGTGATGCTGCCAACTTACTGATTTAGTGTATGATGGTGTT > 2:607892/1‑90 TACAGGTAATCGTTGGCAGAGCGGGCATGAGGATGAAATATTTACATTCGGTGATGCTGCCAACTTACTGATTTAGTGTATGATGGTGTT > 1:174186/1‑90 AATCGTTGGCAGAGCGGGCATGAGGATGAAATATTTACATTCGGTGATGCTGCCAACTTACTGATTTAGTGTATGATGGTGTTTTTGAGG > 1:41157/1‑90 AATCGTTGGCAGAGCGGGCATGAGGATGAAATATTTACATTCGGTGATGCTGCCAACTTACTGATTTAGTGTATGATGGTGTTTTTGAGG > 2:459270/1‑90 AATCGTTGGCAGAGCGGGCATGAGGATGAAATATTTACATTCGGTGATGCTGCCAACTTACTGATTTAGTGTATGATGGTGTTTTTGAGG > 2:436289/1‑90 AATCGTTGGCAGAGCGGGCATGAGGATGAAATATTTACATTCGGTGATGCTGCCAACTTACTGATTTAGTGTATGATGGTGTTTTTGAGG > 1:281430/1‑90 AATCGTTGGCAGAGCGGGCATGAGGATGAAATATTTACATTCGGTGATGCTGCCAACTTACTGATTTAGTGTATGATGGTGTTTTTGAGG < 1:607656/90‑1 AATCGTTGGCAGAGCGGGCATGAGGATGAAATATTTACATTCGGTGATGCTGCCAACTTACTGATTTAGTGTATGATGGTGTTTTTGAGG > 2:62680/1‑90 AATCGTTGGCAGAGCGGGCATGAGGATGAAATATTTACATTCGGTGATGCTGCCAACTTACTGATTTAGTGTATGATGGTGTTTTTGAGG > 2:213543/1‑90 GGCAGAGCGGGCATGAGGATGAAATATTTACATTCGGTGATGCTGCCAACTTACTGATTTAGTGTATGATGGTGTTTTTGAGGTGCTCCA > 1:55661/1‑90 GAGCGGGCATGAGGATGAAATATTTACATTCGGTGATGCTGCCAACTTACTGATTTAGTGTATGATGGTGTTTTTGAGGTGCTCCAGTGG > 2:127416/1‑90 GAGCGGGCATGAGGATGAAATATTTACATTCGGTGATGCTGCCAACTTACTGATTTAGTGTATGATGGTGTTTTTGAGGT > 2:564604/1‑80 GAGCGGGCATGAGGATGAAATATTTACATTCGGTGATGCTGCCAACTTACTGATTTAGTGTATGATGGTGTTTTTGAGGT < 1:564604/80‑1 AGCGGGCATGAGGATGAAATATTTACATTCGGTGATGCTGCCAACTTACTGATTTAGTGTATGATGGTGTTTTTGAGGTGCTCCAGGGGC > 1:719795/1‑90 GCGGGCATGAGGATGAAATATTTACATTCGGTGATGCTGCCAACTTACTGATTTAGTGTATGATGGTGTTTTTGAGGTGCTCCAGTGGCT < 1:472142/90‑1 GGGCATGAGGATGAAATATTTACATTCGGTGATGCTGCCAACTTACTGATTTAGTGTATGATGGTGTTTTTGAGGTGCTCCAGTGGCTTC < 2:138550/90‑1 GGCATGAGGATGAAATATTTACATTCGGTGATGCTGCCAACTTACTGATTTAGTGTATGATGGTGTTTTTGAGGTGCTCCAGTGGCTTCT > 1:502138/1‑90 GAGGATGAAATATTTACATTCGGTGATGCTGCCAACTTACTGATTTAGTGTATGATGGTGTTTTTGAGGTGCTCCAGTGGCTTCTGTTTC > 1:164819/1‑90 GGATGAAATATTTACATTCGGTGATGCTGCCAACTTACTGATTTAGTGTATGATGGTGTTTTTGAGGTGCTCCAGTGGCTTCTGTTTCTA < 2:41157/90‑1 ATGAAATATTTACATTCGGTGATGCTGCCAACTTACTGATTTAGTGTATGATGGTGTTTTTGAGGTGCTCCAGTGGCTTCTGTTTCTATC < 1:468645/90‑1 TGAAATATTTACATTCGGTGATGCTGCCAACTTACTGATTTAGTGTATGATGGTGTTTTTGAGGTGCTCCAGTGGCTTCTGTTTCTATCA < 2:674003/90‑1 TGAAATATTTACATTCGGTGATGCTGCCAACTTACTGATTTAGTGTATGATGGTGTTTTTGAGGTGCTCCAGTGGCTTCTGTTTCTATCA > 2:491538/1‑90 ATTTACATTCGGTGATGCTGCCAACTTACTGATTTAGTGTATGATGGTGTTTTTGAGGTGCTCCAGTGGCTTCTGTTTCTATCAGCTGTC < 2:699697/90‑1 TTTACATTCGGTGATGCTGCCAACTTACTGATTTAGTGTATGATGGTGTTTTTGAGGTGCTCCAGTGGCTTCTGTTTCTATCAGCTGTCC > 1:132205/1‑90 CATTCGGTGATGCTGCCAACTTACTGATTTAGTGTATGATGGTGTTTTTGAGGTGCTCCAGTGGCTTCTGTTTCTATCAGCTGTCCCTCC > 2:521507/1‑90 ATTCGGTGATGCTGCCAACTTACTGATTTAGTGTATGATGGTGTTTTTGAGGTGCTCCAGTGGCTTCTGTTTCTATCAGCTGTCCCTCCT < 2:59777/90‑1 ATTCGGTGATGCTGCCAACTTACTGATTTAGTGTATGATGGTGTTTTTGAGGTGCTCCAGTGGCTTCTGTTTCTATCAGCTGTCCCTCCT < 1:127416/90‑1 TTCGGTGATGCTGCCAACTTACTGATTTAGTGTATGATGGTGTTTTTGAGGTGCTCCAGTGGCTTCTGTTTCTATCAGCTGTCCCTCCTG > 1:276243/1‑90 CGGTGATGCTGCCAACTTACTGATTTAGTGTATGATGGTGTTTTTGAGGTGCTCCAGTGGCTTCTGTTTCTATCAGCTGTCCCTCCTGTT > 2:615094/1‑90 ACAAGGAAGCATCTCCGCAGGTTGTGGGACTTCTGAGTCTACAGGTAATCGTTGGCAGAGCGGGCATGAGGATGAAATATTTACATTC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NZ_CP009273/3575261‑3575348‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑GGTGATGCTGCCAACTTACTGATTTAGTGTATGATGGTGTTTTTGAGGTGCTCCAGTGGCTTCTGTTTCTATCAGCTGTCCCTCCTGTT > NZ_CP009273/3576788‑3576876 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |