| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NZ_CP009273 | = 3575348 | 0 (0.000) | 42 (1.630) | 30/168 | 0.0 | 100% | coding (126/1179 nt) | hcp | Hcp1 family type VI secretion system effector |
| ? | NZ_CP009273 | 3576788 = | NA (NA) | coding (391/417 nt) | BW25113_RS17825 | YrhA family protein | |||||
ACAAGGAAGCATCTCCGCAGGTTGTGGGACTTCTGAGTCTACAGGTAATCGTTGGCAGAGCGGGCATGAGGATGAAATATTTACATTCTCACTCTTAAATAATATTAATAATACGGGGCTTGGTTCACAGTTCCATGGTATAACATTTTGTAAATTAATTGATAAAAGCACTCCATT > NZ_CP009273/3575261‑3575437 | acaaGGAAGCATCTCCGCAGGTTGTGGGACTTCTGAGTCTACAGGTAATCGTTGGCAGAGCGGGCATGAGGATGAAATATTTACATTCgg > 2:215799‑M1/1‑88 (MQ=255) aGGAAGCATCTCCGCAGGTTGTGGGACTTCTGAGTCTACAGGTAATCGTTGGCAGAGCGGGCATGAGGATGAAATATTTACATTCggtga > 1:452706‑M1/1‑85 (MQ=255) gCATCTCCGCAGGTTGTGGGACTTCTGAGTCTACAGGTAATCGTTGGCAGAGCGGGCATGAGGATGAAATATTTACATTCggtgatgctg > 1:93126‑M1/1‑80 (MQ=255) aTCTCCGCAGGTTGTGGGACTTCTGAGTCTACAGGTAATCGTTGGCAGAGCGGGCATGAGGATGAAATATTTACATTCggtgatgctgcc > 2:311064‑M1/1‑78 (MQ=255) cAGGTTGTGGGACTTCTGAGTCTACAGGTAATCGTTGGCAGAGCGGGCATGAGGATGAAATATTTACATTCggtgatgctgccaacttac < 2:221928‑M1/90‑20 (MQ=255) ttGTGGGACTTCTGAGTCTACAGGTAATCGTTGGCAGAGCGGGCATGAGGATGAAATATTTACATTCggtgatgctgccaacttactgat > 1:703472‑M1/1‑67 (MQ=255) tgtgGGACTTCTGAGTCTACAGGTAATCGTTGGCAGAGCGGGCATGAGGATGAAATATTTACATTCggtgatgctgccaacttactgatt > 1:112186‑M1/1‑66 (MQ=255) tgtgGGACTTCTGAGTCTACAGGTAATCGTTGGCAGAGCGGGCATGAGGATGAAATATTTACATTCggtgatgctgccaacttactgatt < 1:114035‑M1/90‑25 (MQ=255) gggACTTCTGAGTCTACAGGTAATCGTTGGCAGAGCGGGCATGAGGATGAAATATTTACATTCggtgatgctgccaacttactgatttag < 1:136533‑M1/90‑28 (MQ=255) tCTGAGTCTACAGGTAATCGTTGGCAGAGCGGGCATGAGGATGAAATATTTACATTCggtgatgctgccaacttactgatttagtgtatg > 2:189865‑M1/1‑57 (MQ=255) gTCTACAGGTAATCGTTGGCAGAGCGGGCATGAGGATGAAATATTTACATTCggtgatgctgccaacttactgatttagtgtatgatggt < 1:581233‑M1/90‑39 (MQ=255) cTACAGGTAATCGTTGGCAGAGCGGGCATGAGGATGAAATATTTACATTCggtgatgctgccaacttac < 1:10572‑M1/69‑20 (MQ=255) cTACAGGTAATCGTTGGCAGAGCGGGCATGAGGATGAAATATTTACATTCggtgatgctgccaacttac > 2:10572‑M1/1‑50 (MQ=255) tACAGGTAATCGTTGGCAGAGCGGGCATGAGGATGAAATATTTACATTCggtgatgctgccaacttactgatttagtgtatgatggtgtt > 2:607892‑M1/1‑49 (MQ=255) tACAGGTAATCGTTGGCAGAGCGGGCATGAGGATGAAATATTTACATTCggtgatgctgccaacttactgatttagtgtatgatggtgtt > 1:174186‑M1/1‑49 (MQ=255) aaTCGTTGGCAGAGCGGGCATGAGGATGAAATATTTACATTCggtgatgctgccaacttactgatttagtgtatgatggtgtttttgagg > 1:41157‑M1/1‑42 (MQ=255) aaTCGTTGGCAGAGCGGGCATGAGGATGAAATATTTACATTCggtgatgctgccaacttactgatttagtgtatgatggtgtttttgagg > 2:459270‑M1/1‑42 (MQ=255) aaTCGTTGGCAGAGCGGGCATGAGGATGAAATATTTACATTCggtgatgctgccaacttactgatttagtgtatgatggtgtttttgagg > 2:436289‑M1/1‑42 (MQ=255) aaTCGTTGGCAGAGCGGGCATGAGGATGAAATATTTACATTCggtgatgctgccaacttactgatttagtgtatgatggtgtttttgagg > 1:281430‑M1/1‑42 (MQ=255) aaTCGTTGGCAGAGCGGGCATGAGGATGAAATATTTACATTCggtgatgctgccaacttactgatttagtgtatgatggtgtttttgagg < 1:607656‑M1/90‑49 (MQ=255) aaTCGTTGGCAGAGCGGGCATGAGGATGAAATATTTACATTCggtgatgctgccaacttactgatttagtgtatgatggtgtttttgagg > 2:62680‑M1/1‑42 (MQ=255) aaTCGTTGGCAGAGCGGGCATGAGGATGAAATATTTACATTCggtgatgctgccaacttactgatttagtgtatgatggtgtttttgagg > 2:213543‑M1/1‑42 (MQ=255) ggCAGAGCGGGCATGAGGATGAAATATTTACATTCggtgatgctgccaacttactgatttagtgtatgatggtgtttttgaggtgctcca > 1:55661‑M1/1‑35 (MQ=255) gagCGGGCATGAGGATGAAATATTTACATTCggtgatgctgccaacttactgatttagtgtatgatggtgtttttgaggtgctccagtgg > 2:127416‑M1/1‑31 (MQ=255) gagCGGGCATGAGGATGAAATATTTACATTCggtgatgctgccaacttactgatttagtgtatgatggtgtttttgaggt > 2:564604‑M1/1‑31 (MQ=255) gagCGGGCATGAGGATGAAATATTTACATTCggtgatgctgccaacttactgatttagtgtatgatggtgtttttgaggt < 1:564604‑M1/80‑50 (MQ=255) agCGGGCATGAGGATGAAATATTTACATTCggtgatgctgccaacttactgatttagtgtatgatggtgtttttgaggtgctccaggggc > 1:719795‑M1/1‑30 (MQ=255) gCGGGCATGAGGATGAAATATTTACATTCggtgatgctgccaacttactgatttagtgtatgatggtgtttttgaggtgctccagtggct < 1:472142‑M1/90‑62 (MQ=255) gggCATGAGGATGAAATATTTACATTCggtgatgctgccaacttactgatttagtgtatgatggtgtttttgaggtgctccagtggcttc < 2:138550‑M1/90‑64 (MQ=255) ggCATGAGGATGAAATATTTACATTCggtgatgctgccaacttactgatttagtgtatgatggtgtttttgaggtgctccagtggcttct > 1:502138‑M1/1‑26 (MQ=255) gAGGATGAAATATTTACATTCggtgatgctgccaacttactgatttagtgtatgatggtgtttttgaggtgctccagtggcttctgtttc > 1:164819‑M1/1‑21 (MQ=255) ggATGAAATATTTACATTCggtgatgctgccaacttactgatttagtgtatgatggtgtttttgaggtgctccagtggcttctgtttcta < 2:41157‑M1/90‑72 (MQ=255) aTGAAATATTTACATTCggtgatgctgccaacttactgatttagtgtatgatggtgtttttgaggtgctccagtggcttctgtttctatc < 1:468645‑M1/90‑74 (MQ=255) tGAAATATTTACATTCggtgatgctgccaacttactgatttagtgtatgatggtgtttttgaggtgctccagtggcttctgtttctatca < 2:674003‑M1/90‑75 (MQ=255) tGAAATATTTACATTCggtgatgctgccaacttactgatttagtgtatgatggtgtttttgaggtgctccagtggcttctgtttctatca > 2:491538‑M1/1‑16 (MQ=255) atTTACATTCggtgatgctgccaacttactgatttagtgtatgatggtgtttttgaggtgctccagtggcttctgtttctatcagctgtc < 2:699697‑M1/90‑81 (MQ=255) tttACATTCggtgatgctgccaacttactgatttagtgtatgatggtgtttttgaggtgctccagtggcttctgtttctatcagctgtcc > 1:132205‑M1/1‑9 (MQ=255) cATTCggtgatgctgccaacttactgatttagtgtatgatggtgtttttgaggtgctccagtggcttctgtttctatcagctgtccctcc > 2:521507‑M1/1‑5 (MQ=255) aTTCggtgatgctgccaacttactgatttagtgtatgatggtgtttttgaggtgctccagtggcttctgtttctatcagctgtccctcct < 2:59777‑M1/90‑87 (MQ=255) aTTCggtgatgctgccaacttactgatttagtgtatgatggtgtttttgaggtgctccagtggcttctgtttctatcagctgtccctcct < 1:127416‑M1/90‑87 (MQ=255) ttCggtgatgctgccaacttactgatttagtgtatgatggtgtttttgaggtgctccagtggcttctgtttctatcagctgtccctcctg > 1:276243‑M1/1‑3 (MQ=255) cggtgatgctgccaacttactgatttagtgtatgatggtgtttttgaggtgctccagtggcttctgtttctatcagctgtccctcctgtt > 2:615094‑M1/1‑1 (MQ=255) | ACAAGGAAGCATCTCCGCAGGTTGTGGGACTTCTGAGTCTACAGGTAATCGTTGGCAGAGCGGGCATGAGGATGAAATATTTACATTCTCACTCTTAAATAATATTAATAATACGGGGCTTGGTTCACAGTTCCATGGTATAACATTTTGTAAATTAATTGATAAAAGCACTCCATT > NZ_CP009273/3575261‑3575437 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |