mutation predictions | marginal predictions | summary statistics | genome diff | command line log
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breseq version 0.35.4 revision f352f80f4bc9
mutation predictions | marginal predictions | summary statistics | genome diff | command line log |
| Marginal read alignment evidence (highest frequency 20 of 43 shown, sorted by frequency from high to low) | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NZ_CP009273 | 899,438 | 0 | A | C | 60.0% | 5.7 / 13.2 | 15 | G162G (GGT→GGG) | ybjP | lipoprotein |
| * | NZ_CP009273 | 1,995,399 | 0 | A | C | 57.1% | 5.8 / 25.1 | 21 | intergenic (‑129/+192) | fliA/fliC | RNA polymerase sigma factor FliA/H48 family flagellin FliC |
| * | NZ_CP009273 | 4,058,958 | 0 | G | A | 57.1% | ‑2.7 / 15.4 | 21 | L57L (CTG→TTG) | yihO | MFS transporter |
| * | NZ_CP009273 | 2,141,241 | 0 | C | A | 55.6% | 3.0 / 10.5 | 9 | N29K (AAC→AAA) | yegD | molecular chaperone |
| * | NZ_CP009273 | 3,659,062 | 0 | C | A | 55.2% | 21.1 / 50.8 | 29 | A37S (GCG→TCG) | gadX | acid resistance transcriptional activator GadX |
| * | NZ_CP009273 | 69,900 | 0 | A | C | 54.5% | 21.5 / 36.3 | 33 | V370G (GTG→GGG) | thiP | thiamine/thiamine pyrophosphate ABC transporter permease ThiP |
| * | NZ_CP009273 | 228,191 | 0 | A | G | 54.5% | 13.1 / 26.5 | 22 | S195G (AGC→GGC) | yafD | endonuclease/exonuclease/phosphatase family protein |
| * | NZ_CP009273 | 937,169 | 0 | T | G | 54.5% | 4.2 / 11.4 | 11 | V252G (GTG→GGG) | dmsA | dimethylsulfoxide reductase subunit A |
| * | NZ_CP009273 | 2,606,478 | 0 | T | C | 54.5% | 2.4 / 10.7 | 11 | I407T (ATC→ACC) | hyfR | DNA‑binding transcriptional regulator HyfR |
| * | NZ_CP009273 | 823,004 | 0 | T | G | 53.8% | 12.2 / 14.6 | 13 | E478D (GAA→GAC) | ybhF | ATP‑binding cassette domain‑containing protein |
| * | NZ_CP009273 | 883,470 | 0 | T | G | 53.8% | 11.9 / 16.1 | 13 | intergenic (+55/+120) | rcdA/ybjL | DNA‑binding transcriptional regulator RcdA/aspartate:alanine antiporter |
| * | NZ_CP009273 | 888,048 | 0 | A | G | 53.8% | 8.6 / 11.6 | 13 | D209G (GAT→GGT) | rimK | 30S ribosomal protein S6‑‑L‑glutamate ligase |
| * | NZ_CP009273 | 2,360,813 | 0 | C | T | 53.8% | 2.6 / 13.4 | 13 | F88F (TTC→TTT) | arnC | undecaprenyl‑phosphate 4‑deoxy‑4‑formamido‑L‑arabinose transferase |
| * | NZ_CP009273 | 2,860,603 | 0 | A | T | 53.3% | ‑0.4 / 23.8 | 30 | V103E (GTA→GAA) | rpoS | RNA polymerase sigma factor RpoS |
| * | NZ_CP009273 | 624,498 | 0 | T | G | 52.9% | 16.5 / 22.6 | 17 | G164G (GGT→GGG) | entA | 2,3‑dihydro‑2,3‑dihydroxybenzoate dehydrogenase EntA |
| * | NZ_CP009273 | 3,254,414 | 0 | A | C | 52.9% | 8.7 / 20.9 | 17 | V455G (GTG→GGG) | tdcE | 2‑ketobutyrate formate‑lyase/pyruvate formate‑lyase |
| * | NZ_CP009273 | 4,594,161 | 0 | C | T | 52.8% | 16.2 / 50.1 | 36 | S62F (TCT→TTT) | bglJ | DNA‑binding transcriptional activator BglJ |
| * | NZ_CP009273 | 1,673,569 | 0 | A | C | 52.4% | 17.2 / 23.4 | 21 | T296P (ACC→CCC) | ydgH | DUF1471 family protein YdgH |
| * | NZ_CP009273 | 4,440,600 | 0 | T | G | 50.0% | 43.7 / 10.7 | 40 | G274G (GGT→GGG) | ytfQ | galactofuranose ABC transporter substrate‑binding protein YtfQ |
| * | NZ_CP009273 | 4,594,167 | 0 | C | T | 50.0% | 19.1 / 25.6 | 36 | S64F (TCT→TTT) | bglJ | DNA‑binding transcriptional activator BglJ |