Missing coverage evidence...
			seq id	start	end	size	←reads	reads→	gene	description
*	*	÷	NZ_CP009273	2005838	2005861	24	2 [1]	[0] 2	BW25113_RS10120/fliE	DUF5503 domain‑containing protein/flagellar hook‑basal body complex protein FliE

GTTTTATCGTAGATTCAGTATTAGATGTGACTTTATTTAATTGAACCGGCTGAGTTTTTAACGAAAGATCATTTAATGGAAACATTTACACTCC  >  NZ_CP009273/2005748‑2005841                                                                                          |     gttTTATCGTAGATTCAGTATTAGATGTGACTTTATTTAATTGAACCGGCTGAGTTTTTAACGAAAGATCATTTAATGGAAACATTTaca      >  1:358559/1‑90 (MQ=255)     tATCGTAGATTCAGTATTAGATGTGACTTTATTTAATTGAACCGGCTGAGTTTTTAACGAAAGATCATTTAATGGAAACATTTACACTcc  <  1:28447/90‑1 (MQ=255)                                                                                          |     GTTTTATCGTAGATTCAGTATTAGATGTGACTTTATTTAATTGAACCGGCTGAGTTTTTAACGAAAGATCATTTAATGGAAACATTTACACTCC  >  NZ_CP009273/2005748‑2005841

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑