Missing coverage evidence...
			seq id	start	end	size	←reads	reads→	gene	description
*	*	÷	NZ_CP009273	2103016	2103049	34	2 [1]	[1] 2	wzx	O16 family O‑antigen flippase

TAAAGATAATTTATTCGTATTCATGCAATTAATTTTAATCTGATAAGCTCATCTAACGTAAAGAGCCTTTCATCTTTTGGCGAAAGGATTAACCCTGA  >  NZ_CP009273/2103042‑2103139         |                                                                                          tAAAGATAATTTATTCGTATTCATGCAATTAATTTTAATCTGATAAGCTCATCTAACGTAAAGAGCCTTTCATCTTTTGGCGAAAGGAtt          <  2:184410/90‑1 (MQ=255)         aTTTATTCGTATTCATGCAATTAATTTTAATCTGATAAGCTCATCTAACGTAAAGAGCCTTTCATCTTTTGGCGAAAGGATTAACCCTGa  <  1:383102/90‑1 (MQ=255)         |                                                                                          TAAAGATAATTTATTCGTATTCATGCAATTAATTTTAATCTGATAAGCTCATCTAACGTAAAGAGCCTTTCATCTTTTGGCGAAAGGATTAACCCTGA  >  NZ_CP009273/2103042‑2103139

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑