Missing coverage evidence...
			seq id	start	end	size	←reads	reads→	gene	description
*	*	÷	NZ_CP009273	1241843	1241940	98	3 [1]	[0] 3	treA	alpha,alpha‑trehalase

GCGCGGGCGAGGATTTTTTCCATTTTAAACATCAGGCTGTTCAGATCGACCGGTACGATGCTGGTGGTGCGTAAGGTATTTAACTGCTGC  >  NZ_CP009273/1241781‑1241870                                                              |                             gcgcGGGCGAGGATTTTTTCCATTTTAAACATCAGGCTGTTCAGATCGACCGGTACGATGCTGGTGGTGCGTAAGGTATTTAACtgctgc  >  1:176252/1‑90 (MQ=255)                ttttCCATTTTAAACATCAGGCTGTTCAGATCGACCGGTACGATGCt                              >  1:306768/1‑47 (MQ=255)                ttttCCATTTTAAACATCAGGCTGTTCAGATCGACCGGTACGATGCt                              <  2:306768/47‑1 (MQ=255)                                                              |                             GCGCGGGCGAGGATTTTTTCCATTTTAAACATCAGGCTGTTCAGATCGACCGGTACGATGCTGGTGGTGCGTAAGGTATTTAACTGCTGC  >  NZ_CP009273/1241781‑1241870

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 31 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑