Missing coverage evidence...
			seq id	start	end	size	←reads	reads→	gene	description
*	*	÷	NZ_CP009273	1241843	1241940	98	3 [1]	[0] 3	treA	alpha,alpha‑trehalase

CAGTGGCAGGTCGATTCGGATTGCTTTTGGCGGTGGCAATATCTTCCACCCATGACTCTGGTCGTGGCGTATCGCGATCGTCCCAGTAGC  >  NZ_CP009273/1241941‑1242030 |                                                                                          cAGTGGCAGGTCGATTCGGATTGCTTTTGGCGGTGGCAATATCTTCCACCCATGACTCTGGTCGTGGCGTATCGCGATCGTCCCAGTAGc  <  1:146984/90‑1 (MQ=255) cAGTGGCAGGTCGATTCGGATTGCTTTTGGCGGTGGCAATATCTTCCACCCATGACTCTGGTCGTGGCGTATCGCGATCGTCCCAGTAGc  <  2:19541/90‑1 (MQ=255) cAGTGGCAGGTCGATTCGGATTGCTTTTGGCGGGGGCAATATCTTCCCCCCCAGACTCCGGTCGTGGGGTATCGCGGTCGTCCCCATAGc  >  1:178383/1‑90 (MQ=255) |                                                                                          CAGTGGCAGGTCGATTCGGATTGCTTTTGGCGGTGGCAATATCTTCCACCCATGACTCTGGTCGTGGCGTATCGCGATCGTCCCAGTAGC  >  NZ_CP009273/1241941‑1242030

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 5 ≤ ATCG/ATCG < 8 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑