| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NZ_CP009273 | 19796 = | NA (NA) | 125 (4.020) | 58/168 | 0.0 | 82.2% | intergenic (‑1/+15) | BW25113_RS25960/BW25113_RS00100 | fimbrial family protein/IS1‑like element IS1A family transposase |
| ? | NZ_CP009273 | = 54744 | 27 (0.870) | intergenic (‑42/+11) | surA/lptD | peptidylprolyl isomerase SurA/LPS assembly protein LptD | |||||
Only 100 of 125 total aligned reads displayed.
GTCGTTCTCAAAATCGGTGGAGCTGCATGACAAAGTCATCGGGCATTATCTGAACATAAAACACTATCAATAAGTTGGAGTCATTACC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NZ_CP009273/19883‑19796‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑TACCACGTAATCCGCAGTGCGGTTAATTGAAATGGAAAAAGTATGAAGAACTGGAAAACGCTGCTTCTCGGTATCGCCATGATCGCGAA < NZ_CP009273/54744‑54656 GTCGTTCTCAAAATCGGTGGAGCTGCATGACAAAGTCATCGGGCATTATCTGAACATAAAACACTATCAATAAGTTGGAGTCATTACCTA < 1:234696/90‑1 TCGTTCTCAAAATCGGTGGAGCTGCATGACAAAGTCATCGGGCATTATCTGAACATAAAACACTATCAATAAGTTGGAGTCATTACCTAC > 2:412093/1‑90 TCGTTCTCAAAATCGGTGGAGCTGCATGACAAAGTCATCGGGCATTATCTGAACATAAAACACTATCAATAAGTTGGAGTCATTACCTAC < 2:224523/90‑1 TCGTTCTCAAAATCGGTGGAGCTGCATGACAAAGTCATCGGGCATTATCTGAACATAAAACACTATCAATAAGTTGGAGTCATTACCTAC > 2:147764/1‑90 GTTCTCAAAATCGGTGGAGCTGCATGACAAAGTCATCGGGCATTATCTGAACATAAAACACTATTAATAAGTTGGAGTCATTACCTACCA < 2:143735/90‑1 GTTCTCAAAATCGGTGGAGCTGCATGACAAAGTCATCGGGCATTATCTGAACATAAAACACTATCAATAAGTTGGAGTCATTACCTACCA < 1:96855/90‑1 GTTCTCAAAATCGGTGGAGCTGCATGACAAAGTCATCGGGCATTATCTGAACATAAAACACTATCAATAAGTTGGAGTCATTACCTACCA < 1:91579/90‑1 TCTCAAAATCGGTGGAGCTGCATGACAAAGTCATCGGGCATTATCTGAACATAAAACACTATCAATAAGTTGGAGTCATTACCTACCACG < 2:806765/90‑1 CAAAATCGGTGGAGCTGCATGACAAAGTCATCGGGCATTATCTGAACATAAAACACTATCAATAAGTTGGAGTCATTACCTACCACGTAA < 2:754174/90‑1 AAATCGGTGGAGCTGCATGACAAAGTCATCGGGCATTATCTGAACATAAAACACTATCAATAAGTTGGAGTCATTACCTACCACGTAATC < 2:115413/90‑1 AATCGGTGGAGCTGCATGACAAAGTCATCGGGCATTATCTGAACATAAAACACTATCAATAAGTTGGAGTCATTACCTACCACGTAATCC < 2:339811/90‑1 TCGGTGGAGCTGCATGACAAAGTCATCGGGCATTATCTGAACATAAAACACTATCAATAAGTTGGAGTCATTACCTACCACGTAATCCGC < 2:899737/90‑1 TCGGTGGAGCTGCATGACAAAGTCATCGGGCATTATCTGAACATAAAACACTATCAATAAGTTGGAGTCATTACCTACCACGTAATCCGC < 2:473549/90‑1 TCGGTGGAGCTGCATGACAAAGTCATCGGGCATTATCTGAACATAAAACACTATCAATAAGTTGGAGTCATTACCTACCACGTAATCCGC < 1:694520/90‑1 GGTGGAGCTGCATGACAAAGTCATCGGGCATTATCTGAACATAAAACACTATCAATAAGTTGGAGTCATTACCTACCACGTAATCCGCAG < 2:762014/90‑1 GTGGAGCTGCATGACAAAGTCATCGGGCATTATCTGAACATAAAACACTATCAATAAGTTGGAGTCATTACCTACCACGTAATCCGCAGT > 2:190146/1‑90 GTGGAGCTGCATGACAAAGTCATCGGGCATTATCTGAACATAAAACACTATCAATAAGTTGGAGTCATTACCTACCACGTAATCCGCAGT > 2:808176/1‑90 TGGAGCTGCATGACAAAGTCATCGGGCATTATCTGAACATAAAACACTATCAATAAGTTGGAGTCATTACCTACCACGTAATCCGCAGTG < 1:334700/90‑1 TGGAGCTGCATGACAAAGTCATCGGGCATTATCTGAACATAAAACACTATCAATAAGTTGGAGTCATTACCTACCACGTAATCCGCAGTG < 1:131737/90‑1 GGAGCTGCATGACAAAGTCATCGGGCATTATCTGAACATAAAACACTATCAATAAGTTGGAGTCATTACCTACCACGTAATCCGCAGTGC < 2:837461/90‑1 GGAGCTGCATGACAAAGTCATCGGGCATTATCTGAACATAAAACACTATCAATAAGTTGGAGTCATTACCTACCACGTAATCCGCAGTGC > 1:701960/1‑90 GGAGCTGCATGACAAAGTCATCGGGCATTATCTGAACATAAAACACTATCAATAAGTTGGAGTCATTACCTACCACGTAATCCGCAGTGC < 2:632619/90‑1 AGCTGCATGACAAAGTCATCGGGCATTATCTGAACATAAAACACTATCAATAAGTTGGAGTCATTACCTACCACGTAATCCGCAGTGCGG < 2:241283/90‑1 CATGACAAAGTCATCGGGCATTATCTGAACATAAAACACTATCAATAAGTTGGAGTCATTACCTACCACGTAATCCGCAGTGCGGTTAAT < 1:235095/90‑1 ATGACAAAGTCATCGGGCATTATCTGAACATAAAACACTATCAATAAGTTGGAGTCATTACCTACCACGTAATCCGCAGTGCGGTTAATT > 2:125536/1‑90 ATGACAAAGTCATCGGGCATTATCTGAACATAAAACACTATCAATAAGTTGGAGTCATTACCTACCACGTAATCCGCAGTGCGGTTAATT > 1:102222/1‑90 ACAAAGTCATCGGGCATTATCTGAACATAAAACACTATCAATAAGTTGGAGTCATTACCTACCACGTAATCCGCAGTGCGGTTAATTGAA < 2:596168/90‑1 AAAGTCATCGGGCATTATCTGAACATAAAACACTATCAATAAGTTGGAGTCATTACCTACCACGTAATCCGCAGTGCGGTTAATTGAAAT < 2:339330/90‑1 AAGTCATCGGGCATTATCTGAACATAAAACACTATCAATAAGTTGGAGTCATTACCTACCACGTAATCCGCAGTGCGGTTAATTGAAATG > 1:629869/1‑90 GTCATCGGGCATTATCTGAACATAAAACACTATCAATAAGTTGGAGTCATTACCTACCACGTAATCCGCAGTGCGGTTAATTGAAATGGA > 2:213329/1‑90 GTCATCGGGCATTATCTGAACATAAAACACTATCAATAAGTTGGAGTCATTACCTACCACGTAATCCGCAGTGCGGTTAATTGAAATGGA > 2:726523/1‑90 TCATCGGGCATTATCTGAACATAAAACACTATCAATAAGTTGGAGTCATTACCTACCACGTAATCCGCAGTGCGGTTAATTGAAATGGAA < 1:255303/90‑1 TCATCGGGCATTATCTGAACATAAAACACTATCAATAAGTTGGAGTCATTACCTACCACGTAATCCGCAGTGCGGTTAATTGAAATGGAA < 2:754227/90‑1 CATCGGGCATTATCTGAACATAAAACACTATCAATAAGTTGGAGTCATTACCTACCACGTAATCCGCAGTGCGGTTAATTGAAATGGAAA < 1:839717/90‑1 ATCGGGCATTATCTGAACATAAAACACTATCAATAAGTTGGAGTCATTACCTACCACGTAATCCGCAGTGCGGTTAATTGAAATGGAAAA < 1:525976/90‑1 ATCGGGCATTATCTGAACATAAAACACTATCAATAAGTTGGAGTCATTACCTACCACGTAATCCGCAGTGCGGTTAATTGAAATGGAAAA < 2:137352/90‑1 CGGGCATTATCTGAACATAAAACACTATCAATAAGTTGGAGTCATTACCTACCACGTAATCCGTAGTGCGGTTAATTGAAATGGAAAAAG < 1:118215/90‑1 CGGGCATTATCTGAACATAAAACACTATCAATAAGTTGGAGTCATTACCTACCACGTAATCCGCAGTGCGGTTAATTGAAATGGAAAAAG < 1:646973/90‑1 ATTATCTGATCATAAAACACTATCAATAAGTTGGAGTCATTACCTACCACGTAATCCGCAGTGCGGTTAATTGAAATGGAAAAAGTATGA > 2:292939/1‑90 ATTATCTGAACATAAAACACTATCAATAAGTTGGAGTCATTACCTACCACGTAATCCGCAGTGCGGTTAATTGAAATGGAAAAAGTATGA > 1:209967/1‑90 TATCTGAACATAAAACACTATCAATAAGTTGGAGTCATTACCTACCACGTAATCCGCAGTGCGGTTAATTGAAATGGAAAAAGTATGAAG < 1:109017/90‑1 ATCTGAACATAAAACACTATCAATAAGTTGGAGTCATTACCTACCACGTAATCCGCAGTGCGGTTAATTGAAATGGAAAAAGTATGAAGA < 1:866956/90‑1 CTGAACATAAAACACTATCAATAAGTTGGAGTCATTACCTACCACGTAATCCGCAGTGCGGTTAATTGAAATGGAAAAAGTATGAAGAAC < 1:387502/90‑1 GAACATAAAACACTATCAATAAGTTGGAGTCATTACCTACCACGTAATCCGCAGTGCGGTTAATTGAAATGGAAAAAGTATGAAGAACTG > 2:589559/1‑90 GAACATAAAACACTATCAATAAGTTGGAGTCATTACCTACCACGTAATCCGCAGTGCGGTTAATTGAAATGGAAAAAGTATGAAGAACTG > 1:482640/1‑90 GAACATAAAACACTATCAATAAGTTGGAGTCATTACCTACCACGTAATCCGCAGTGCGGTTAATTGAAATGGAAAAAGTATGAAGAACTG > 2:377782/1‑90 TAAAACACTATCAATAAGTTGGAGTCATTACCTACCACGTAATCCGCAGTGCGGTTAATTGAAATGGAAAAAGTATGAAGAACTGGAAAA > 1:897871/1‑90 AAAACACTATCAATAAGTTGGAGTCATTACCTACCACGTAATCCGCAGTGCGGTTAATTGAAATGGAAAAAGTATGAAGAACTGGAAAAC < 1:36458/90‑1 ACACTATCAATAAGTTGGAGTCATTACCTACCACGTAATCCGCAGTGCGGCTAATTGAAATGGAAAAAGTATGAAGAACTGGAAAACGCT < 1:766619/90‑1 CACTATCAATAAGTTGGAGTCATTACCTACCACGTAATCCGCAGTGCGGTTAATTGAAATGGAAAAAGTATGAAGAACTGGAAAACGCTG > 1:752351/1‑90 CACTATCAATAAGTTGGAGTCATTACCTACCACGTAATCCGCAGTGCGGTTAATTGAAATGGAAAAAGTATGAAGAACTGGAAAACGCTG > 2:237208/1‑90 CTATCAATAAGTTGGAGTCATTACCTACCACGTAATCCGCAGTGCGGTTAATTGAAATGGAAAAAGTATGAAGAACTGGAAAACGCTGCT > 2:568322/1‑90 CTATCAATAAGTTGGAGTCATTACCTACCACGTAATCCGCAGTGCGGTTAATTGAAATGGAAAAAGTATGAAGAACTGGAAAACGCTGCT > 1:552414/1‑90 TATCAATAAGTTGGAGTCATTACCTACCACGTAATCCGCAGTGCGGTTAATTGAAATGGAAAAAGTATGAAGAACTGGAAAACGCTGCTT > 1:101569/1‑90 TATCAATAAGTTGGAGTCATTACCTACCACGTAATCCGCAGTGCGGTTAATTGAAATGGAAAAAGTATGAAGAACTGGAAAACGCTGCTT > 2:424729/1‑90 TATCAATAAGTTGGAGTCATTACCTACCACGTAATCCGCAGTGCGGTTAATTGAAATGGAAAAAGTATGAAGAACTGGAAAACGCTGCTT > 2:759451/1‑90 TATCAATAAGTTGGAGTCATTACCTACCACGTAATCCGCAGTGCGGTTAATTGAAATGGAAAAAGTATGAAGAACTGGAAAACGCTGCTT > 1:197795/1‑90 TATCAATAAGTTGGAGTCATTACCTACCACGTAATCCGCAGTGCGGTTAATTGAAATGGAAAAAGTATGAAGAACTGGAAAACGCTGCTT > 1:713757/1‑90 TATCAATAAGTTGGAGTCATTACCTACCACGTAATCCGCAGTGCGGTTAATTGAAATGGAAAAAGTATGAAGAACTGGAAAACGCTGCTT > 1:803731/1‑90 TATCAATAAGTTGGAGTCATTACCTACCACGTAATCCGCAGTG > 1:456610/1‑43 TATCAATAAGTTGGAGTCATTACCTACCACGTAATCCGCAGTG < 1:533791/43‑1 ATCAATAAGTTGGAGTCATTACCTACCACGTAATCCGCAGTGCGGTTAATTGAAATGGAAAAAGTATGAAGAACTGGAAAACGCTGCTTC > 1:19041/1‑90 TCAATAAGTTGGAGTCATTACCTACCACGTAATCCGCAGTGCGGTTAATTGAAATGGAAAAAGTATGAAGAACTGGAAAACGCTGCTTCT < 2:419856/90‑1 AATAAGTTGGAGTCATTACCTACCACGTAATCCGCAGTGCGGTTAATTGAAATGGAAAAAGTATGAAGAACTGGAAAACGCTGCTTCTCG > 1:73477/1‑90 AAGTTGGAGTCATTACCTACCACGTAATCCGCAGTGCGGTTAATTGAAATGGAAAAAGTATGAAGAACTGGAAAACGCTGCTTCTCGGTA < 1:190146/90‑1 AAGTTGGAGTCATTACCTACCACGTAATCCGCAGTGCGGTTAATTGAAATGGAAAAAGTATGAAGAACTGGAAAACGCTGCTTCTCGGTA < 1:125536/90‑1 AGTTGGAGTCATTACCTACCACGTAATCCGCAGTGCGGTTAATTGAAATGGAAAAAGTATGAAGAACTGGAAAACGCTGCTTCTCGGTAT > 2:578146/1‑90 GTTGGAGTCATTACCTACCACGTAATCCGCAGTGCGGTTAATTGAAATGGAAAAAGTATGAAGAACTGGAAAACGCTGCTTCTCGGTATC > 1:381682/1‑90 GTTGGAGTCATTACCTACCACGTAATCCGCAGTGCGGTTAATTGAAATGGAAAAAGTATGAAGAACTGGAAAACGCTGCTTCTCGGTATC > 1:480803/1‑90 GTTGGAGTCATTACCTACCACGTAATCCGCAGTGCGGTTAATTGAAATGGAAAAAGTATGAAGAACTGGAAAACGCTGCTTCTCGGTATC < 1:496762/90‑1 GTTGGAGTCATTACCTACCACGTAATCCGCAGTGCGGTTAATTGAAATGGAAAAAGTATGAAGAACTGGAAAACGCTGCTTCTCGGTATC > 1:227039/1‑90 GTTGGAGTCATTACCTACCACGTAATCCGCAGTGCGGTTAATTGAAATGGAAAAAGTATGAAGAACTGGAAAACGCTGCTTCTCGGTATC > 1:118886/1‑90 TGGAGTCATTACCTACCACGTAATCCGCAGTGCGGTTAATTGAAATGGAAAAAGTATGAAGAACTGGAAAACGCTGCTTCTCGGTATCGC > 2:870528/1‑90 TGGAGTCATTACCTACCACGTAATCCGCAGTGCGGTTAATTGAAATGGAAAAAGTATGAAGAACTGGAAAACGCTGCTTCTCGGTATCGC > 2:11196/1‑90 TGGAGTCATTACCTACCACGTAATCCGCAGTGCGGTTAATTGAAATGGAAAAAGTATGAAGAACTGGAAAACGCTGCTTCTCGGTATCGC > 1:745162/1‑90 TGGAGTCATTACCTACCACGTAATCCGCAGTGCGGTTAATTGAAATGGAAAAAGTATGAAGAACTGGAAAACGCTGCTTCTCGGTATCGC > 2:50376/1‑90 TGGAGTCATTACCTACCACGTAATCCGCAGTGCGGTTAATTGAAATGGAAAAAGTATGAAGAACTGGAAAACGCTGCTTCTCGGTATCGC > 2:102608/1‑90 TGGAGTCATTACCTACCACGTAATCCGCAGTGCGGTTAATTGAAATGGAAAAAGTATGAAGAACTGGAAAACGCTGCTTCTCGGTATCGC > 1:641754/1‑90 TGGAGTCATTACCTACCACGTAATCCGCAGTGCGGTTAATTGAAATGGAAAAAGTATGAAGAACTGGAAAACGCTGCTTCTCGGTATCGC > 1:66776/1‑90 TGGAGTCATTACCTACCACGTAATCCGCAGTGCGGTTAATTGAAATGGAAAAAGTATGAAGA < 1:659166/62‑1 TGGAGTCATTACCTACCACGTAATCCGCAGTGCGGTTAATTGAAATGGAAAAAGTATGAAGA > 2:659166/1‑62 TGGAGTCATTACCTACCACGTAATCCGCAGTGCGGTTAATTGAAATGGAAAA > 1:149750/1‑52 TGGAGTCATTACCTACCACGTAATCCGCAGTGCGGTTAATTGAAATGGAAAA < 2:149750/52‑1 TGGAGTCATTACCTACCACGTAATCCGCAGTGCGGTTA < 2:697819/38‑1 TGGAGTCATTACCTACCACGTAATCCGCAGTGCGGTTA > 1:697819/1‑38 GAGTCATTACCTACCACGTAATCCGCAGTGCGGTTAATTGAAATGGAAAAAGTATGAAGAACTGGAAAACGCTGCTTCTCGGTATCGCCA > 1:897208/1‑90 GAGTCATTACCTACCACGTAATCCGCAGTGCGGTTAATTGAAATGGAAAAAGTATGAAGAACTGGAAAACGCTGCTTCTCGGTATCGCCA > 2:658483/1‑90 GAGTCATTACCTACCACGTAATCCGCAGTGCGGTTAATTGAAATGGAAAAAGTATGAAGAACTGGAAAACGCTGCTTCTCGGTATCGCCA > 1:802887/1‑90 GAGTCATTACCTACCACGTAATCCGCAGTGCGGTTAATTGAAATGGAAAAAGTATGAAGAACTGGAAAACGCTGCTTC < 1:876645/78‑1 GAGTCATTACCTACCACGTAATCCGCAGTGCGGTTAATTGAAATGGAAAAAGTATGAAGAACTGGAAAACGCTGCTTC > 2:876645/1‑78 AGTCATTACCTACCACGTAATCCGCAGTGCGGTTAATTGAAATGGAAAAAGTATGAAGAACTGGAAAACGCTGCTTCTCGGTATCGCCAT > 2:409388/1‑90 GTCATTACCTACCACGTAATCCGCAGTGCGGTTAATTGAAATGGAAAAAGTATGAAGAACTGGAAAACGCTGCTTCTCGGTATCGCCATG > 2:359255/1‑90 TCATTACCTACCACGTAATCCGCAGTGCGGTTAATTGAAATGGAAAAAGTATGAAGAACTGGAAAACGCTGCTTCTCGGTATCGCCATGA < 1:545897/90‑1 CATTACCTACCACGTAATCCGCAGTGCGGTTAATTGAAATGGAAAAAGTATGAAGAACTGGAAAACGCTGCTTCTCGGTATCGCCATGAT > 2:234017/1‑90 CATTACCTACCACGTAATCCGCAGTGCGGTTAATTGAAATGGAAAAAGTATGAAGAACTGGAAAACGCTGCTTCTCGGTATCGCCATGAT > 1:841162/1‑90 CATTACCTACCACGTAATCCGCAGTGCGGTTAATTGAAATGGAAAAAGTATGAAGAACTGGAAAACGCTGCTTCTCGGTATCGCCATGAT > 2:889500/1‑90 CATTACCTACCACGTAATCCGCAGTGCGGTTAATTGAAATGGAAA > 2:520758/1‑45 CCTACCACGTAATCCGCAGTGCGGTTAATTGAAATGGAAAAAGTATGAAGAACTGGAAAACGCTGCTTCTCGGTATCGCCATGATCGCGA < 2:265960/90‑1 CTACCACGTAATCCGCAGTGCGGTTAATTGAAATGGAAAAAGTATGAAGAACTGGAAAACGCTGCTTCTCGGTATCGCCATGATCGCGAA > 1:790436/1‑90 CTACCACGTAATCCGCAGTGCGGTTAATTGAAATGGAAAAAGTATGAAGAACTGGAAAACGCTGCTTCTCGGTATCGCCATGATCGCGAA > 2:52686/1‑90 GTCGTTCTCAAAATCGGTGGAGCTGCATGACAAAGTCATCGGGCATTATCTGAACATAAAACACTATCAATAAGTTGGAGTCATTACC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NZ_CP009273/19883‑19796‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑TACCACGTAATCCGCAGTGCGGTTAATTGAAATGGAAAAAGTATGAAGAACTGGAAAACGCTGCTTCTCGGTATCGCCATGATCGCGAA < NZ_CP009273/54744‑54656 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 31 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |